Q84WU6 (ARFQ_ARATH) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 67.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Auxin response factor 17 | ||||||
| Gene names |
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| Organism | Arabidopsis thaliana (Mouse-ear cress) | ||||||
| Taxonomic identifier | 3702 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Protein attributes
| Sequence length | 585 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Ref.5 |
| Subunit structure | Homo and heterodimers By similarity. |
| Subcellular location | |
| Sequence similarities | Belongs to the ARF family. Contains 1 TF-B3 DNA-binding domain. |
| Sequence caution | The sequence AAF17677.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence AAG51629.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Auxin signaling pathway Transcription Transcription regulation |
| Cellular component | Nucleus |
| Ligand | DNA-binding |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | adventitious root development Inferred from mutant phenotype. Source: TAIR anatomical structure morphogenesisInferred from mutant phenotype. Source: TAIR auxin mediated signaling pathwayTraceable author statement. Source: TAIR regulation of transcription, DNA-dependentTraceable author statement. Source: TAIR transcription, DNA-dependentInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | DNA binding Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 585 | 585 | Auxin response factor 17 | PRO_0000111521 | |||||
Regions | |||||||||
| DNA binding | 119 – 221 | 103 | TF-B3 | ||||||
Natural variations | |||||||||
| Natural variant | 414 | 1 | Y → F in strain: cv. Ag-0, cv. An-1, cv. Cvi-0, cv. Edi-0, cv. Kas-2, cv. Ll-0, cv. Nok-3, cv. Wassilewskija, cv. Wei-0 and cv. Wt-5. Ref.4 | ||||||
| Natural variant | 518 | 1 | S → P in strain: cv. Ag-0, cv. An-1, cv. Cvi-0, cv. Edi-0, cv. Ei-2, cv. Gy-2, cv. Kas-2, cv. Ll-0, cv. Mt-0, cv. Nok-3, cv. Wassilewskija, cv. Wei-0 and cv. Wt-5. Ref.4 | ||||||
Experimental info | |||||||||
| Sequence conflict | 102 | 1 | R → Q in AAL07033. Ref.3 | ||||||
| Sequence conflict | 456 | 1 | G → R in AAL07033. Ref.3 | ||||||
Sequences
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References
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC009243 Genomic DNA. Translation: AAF17677.1. Sequence problems. AC012193 Genomic DNA. Translation: AAG51629.1. Sequence problems. CP002684 Genomic DNA. Translation: AEE36034.1. AY056184 mRNA. Translation: AAL07033.1. BT002749 mRNA. Translation: AAO22578.1. EU550144 Genomic DNA. Translation: ACB30930.1. EU550145 Genomic DNA. Translation: ACB30931.1. EU550146 Genomic DNA. Translation: ACB30932.1. EU550147 Genomic DNA. Translation: ACB30933.1. EU550148 Genomic DNA. Translation: ACB30934.1. EU550149 Genomic DNA. Translation: ACB30935.1. EU550150 Genomic DNA. Translation: ACB30936.1. EU550151 Genomic DNA. Translation: ACB30937.1. EU550152 Genomic DNA. Translation: ACB30938.1. EU550153 Genomic DNA. Translation: ACB30939.1. EU550154 Genomic DNA. Translation: ACB30940.1. EU550155 Genomic DNA. Translation: ACB30941.1. EU550156 Genomic DNA. Translation: ACB30942.1. EU550157 Genomic DNA. Translation: ACB30943.1. EU550158 Genomic DNA. Translation: ACB30944.1. EU550159 Genomic DNA. Translation: ACB30945.1. EU550160 Genomic DNA. Translation: ACB30946.1. EU550161 Genomic DNA. Translation: ACB30947.1. EU550162 Genomic DNA. Translation: ACB30948.1. EU550163 Genomic DNA. Translation: ACB30949.1. EU550164 Genomic DNA. Translation: ACB30950.1. EU550165 Genomic DNA. Translation: ACB30951.1. EU550166 Genomic DNA. Translation: ACB30952.1. EU550167 Genomic DNA. Translation: ACB30953.1. |
| IPI | IPI00522722. |
| PIR | D96808. |
| RefSeq | NP_565161.1. NM_106434.1. |
| UniGene | At.26363. |
3D structure databases | |
| ProteinModelPortal | Q84WU6. |
| SMR | Q84WU6. Positions 115-223. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q84WU6. 3 interactions. |
| STRING | Q84WU6. |
Proteomic databases | |
| PRIDE | Q84WU6. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | AT1G77850.1; AT1G77850.1; AT1G77850. |
| GeneID | 844120. |
| GenomeReviews | Gene locus AT1G77850 in contig CT485782_GR. |
| KEGG | ath:AT1G77850. |
| NMPDR | fig|3702.1.peg.7330. |
Organism-specific databases | |
| GeneFarm | 3413. 345. |
| TAIR | At1g77850. |
Phylogenomic databases | |
| GeneTree | EPGT00070000028280. |
| OMA | VSTELNI. |
| PhylomeDB | Q84WU6. |
| ProtClustDB | CLSN2689276. |
Gene expression databases | |
| ArrayExpress | Q84WU6. |
| Genevestigator | Q84WU6. |
| GermOnline | AT1G77850. Arabidopsis thaliana. |
Family and domain databases | |
| InterPro | IPR010525. Auxin_resp. IPR003340. B3_DNA-bd. IPR015300. DNA-bd_pseudobarrel. [Graphical view] |
| Gene3D | G3DSA:2.40.330.10. G3DSA:2.40.330.10. 1 hit. |
| Pfam | PF06507. Auxin_resp. 1 hit. PF02362. B3. 1 hit. [Graphical view] |
| SMART | SM01019. B3. 1 hit. [Graphical view] |
| SUPFAM | SSF101936. Restrict_endonuc_II_EcoRII_N. 1 hit. |
| PROSITE | PS50863. B3. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | ARFQ_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q84WU6 Secondary accession number(s): B2CTG7 Q9SH16 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| SIMILARITY comments Index of protein domains and families |

Clusters with