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Q84W85 (Q84W85_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative uncharacterized protein At4g37950 EMBL AAO42144.1
Submitted name:
Putative uncharacterized protein At4g37960 EMBL BAF00407.1
Submitted name:
Rhamnogalacturonate lyase family protein EMBL AEE86857.1
Gene names
Name:At4g37960 EMBL BAF00407.1
Ordered Locus Names:At4g37950 TAIR At4g37950
ORF Names:AT4G37950 EMBL AEE86857.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL AAO42144.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length678 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Molecular functionLyase EMBL AEE86857.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

lyase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q84W85 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 926AE4E0F3FAF6D4

FASTA67877,332
        10         20         30         40         50         60 
MEYGAPGMKA GRRVLTPLFV LVFLLQGVHS QTSRNKFNIA KAGHKLASPP VTLKKVGDNQ 

        70         80         90        100        110        120 
VVVDNGIIDV TFSSPQGLIT RIKYNGLNNV LNDQIENRGY WDVVWYKPGQ VSSTDYLVGT 

       130        140        150        160        170        180 
KFDIVNQTSE QIEISFSRTF SQRGSGIPLN VDKRYIIRRG VSGIYMYAVL ERLIGWPDVD 

       190        200        210        220        230        240 
MDQIRIVFKL NTTKFDFMAV SDNRQKIMPF DTDRDITKGR ASPLAYKEAV HLINPQNHML 

       250        260        270        280        290        300 
KGQVDDKYMY SVENKDNKVH GWISSDQRIG FWMITPSDEF HACGPIKQDL TSHVGPTTLS 

       310        320        330        340        350        360 
MFTSVHYAGK DMNTNYKSKE PWKKVFGPVF VYLNSASSRN LLWTDAKRQM VSEVQSWPYD 

       370        380        390        400        410        420 
FVKSVDYPLH HQRGTVKGQL FVIDRYIKNV TYLFGQFAFV GLALPGEAGS WQTENKGYQF 

       430        440        450        460        470        480 
WTRADKMGMF TIANVRPGTY SLYAWVSGFI GDYKYVRDIT ITPGREIDVG HIVYVPPRNG 

       490        500        510        520        530        540 
PTLWEIGQPD RTAAEFYIPD PDPTLFTKLY LNYSNPQDRF RQYGLWDRYS VLYPRNDLVF 

       550        560        570        580        590        600 
TAGVSDYKKD WFYAHVNRKA GNGTYKATTW QIKFNLKAVI QTRIYTLRIA LAAASTIDLL 

       610        620        630        640        650        660 
VWVNEVDSKP LFITGLIGRD NAIARHGIHG LYKLYNIDVH GKLLRVGNNT IFLTHGRNSD 

       670 
SFSGVMYDYL RLEGPSGV

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
EU, CSHL and WU Arabidopsis Sequencing Project
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B. expand/collapse author list , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
Nature 402:769-777(1999) [PubMed: 10617198] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Arabidopsis Full Length cDNA Clones."
Yamada K., Chan M.M., Chang C.H., Dale J.M., Hsuan V.W., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M., Wong C., Wu H.C., Yu G., Yuan S., Carninci P., Chen H., Cheuk R., Hayashizaki Y. expand/collapse author list , Ishida J., Jones T., Kamiya A., Kawai J., Kim C.J., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tripp M.G., Wu T., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[4]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. expand/collapse author list , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BT004121 mRNA. Translation: AAO42144.1.
CP002687 Genomic DNA. Translation: AEE86857.1.
AK228481 mRNA. Translation: BAF00407.1.
IPIIPI00517709.
RefSeqNP_195508.2. NM_119956.3.
UniGeneAt.48950.
At.67725.

3D structure databases

ProteinModelPortalQ84W85.
ModBaseSearch...

Protein family/group databases

CAZyPL4. Polysaccharide Lyase Family 4.

Proteomic databases

PRIDEQ84W85.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT4G37950.1; AT4G37950.1; AT4G37950.
GeneID829951.
KEGGath:AT4G37950.
NMPDRfig|3702.1.peg.21908.

Organism-specific databases

TAIRAt4g37950.

Phylogenomic databases

InParanoidQ84W85.
OMAVMYDYLR.
PhylomeDBQ84W85.
ProtClustDBCLSN2913234.

Gene expression databases

GenevestigatorQ84W85.

Family and domain databases

InterProIPR013784. Carb-bd-like_fold.
IPR008979. Galactose-bd-like.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamPF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMSSF49452. CBD_4. 1 hit.
SSF49785. Gal_bind_like. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ84W85_ARATH
AccessionPrimary (citable) accession number: Q84W85
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: January 25, 2012
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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