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Q84W27

- SCP43_ARATH

UniProt

Q84W27 - SCP43_ARATH

Protein

Serine carboxypeptidase-like 43

Gene

SCPL43

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 68 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Probable carboxypeptidase.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei178 – 1781PROSITE-ProRule annotation
    Active sitei350 – 3501PROSITE-ProRule annotation
    Active sitei407 – 4071PROSITE-ProRule annotation

    GO - Molecular functioni

    1. serine-type carboxypeptidase activity Source: InterPro

    Keywords - Molecular functioni

    Carboxypeptidase, Hydrolase, Protease

    Enzyme and pathway databases

    BioCyciARA:AT2G12480-MONOMER.
    ARA:GQT-2236-MONOMER.

    Protein family/group databases

    MEROPSiS10.A33.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Serine carboxypeptidase-like 43 (EC:3.4.16.-)
    Gene namesi
    Name:SCPL43
    Ordered Locus Names:At2g12480
    ORF Names:T27D6.5
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G12480.

    Subcellular locationi

    Secreted Curated

    GO - Cellular componenti

    1. extracellular region Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Secreted

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2323Sequence AnalysisAdd
    BLAST
    Chaini24 – 442419Serine carboxypeptidase-like 43PRO_0000274658Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Disulfide bondi86 ↔ 313By similarity
    Glycosylationi137 – 1371N-linked (GlcNAc...)Sequence Analysis
    Disulfide bondi246 ↔ 258Sequence Analysis
    Glycosylationi253 – 2531N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi302 – 3021N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi318 – 3181N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Disulfide bond, Glycoprotein

    Proteomic databases

    PaxDbiQ84W27.
    PRIDEiQ84W27.

    Expressioni

    Tissue specificityi

    Expression not detected.1 Publication

    Gene expression databases

    GenevestigatoriQ84W27.

    Structurei

    3D structure databases

    ProteinModelPortaliQ84W27.
    SMRiQ84W27. Positions 27-431.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the peptidase S10 family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG2939.
    HOGENOMiHOG000198295.
    InParanoidiQ84W27.
    KOiK16297.
    PhylomeDBiQ84W27.

    Family and domain databases

    Gene3Di3.40.50.1820. 1 hit.
    InterProiIPR029058. AB_hydrolase.
    IPR001563. Peptidase_S10.
    IPR018202. Peptidase_S10_AS.
    [Graphical view]
    PANTHERiPTHR11802. PTHR11802. 1 hit.
    PfamiPF00450. Peptidase_S10. 1 hit.
    [Graphical view]
    PRINTSiPR00724. CRBOXYPTASEC.
    SUPFAMiSSF53474. SSF53474. 1 hit.
    PROSITEiPS00131. CARBOXYPEPT_SER_SER. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    This entry describes 1 isoform i produced by alternative splicing. Align

    Note: A number of isoforms are produced. According to EST sequences.

    Isoform 1 (identifier: Q84W27-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

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    MVSSRAVVMA IMVLVTVQWL VFAEGYPEED LVARLPGQPN VGFRQFAGYV    50
    DVDSENGRSL FYYYVEAVKE PDTKPLTLWL NGGPGCSSVG GGAFTELGPF 100
    YPTGDGRGLR LNSMSWNKAS NLLFVESPAG VGWSYSNRSS DYNTGDKSTV 150
    NDMLVFLLRW FNKFPELKSR DLFLTGESYA GHYIPQLADV ILSYNSRSSG 200
    FKFNVKGIAI GNPLLKLDRD FAAAYEYFWS HGMISDEVRL TIMNQCDFAN 250
    PKNMSNACIY AIVESSVLTE YINSYHILLD VCYPSIVQQE LRLKKMNALH 300
    ANRTRLPYEW TMCSNRLNYS GIDGYIDMLP SLKRIIQNQT PVWIFSGDQD 350
    SVIPLQSSRT LVRELAEDLN FKTTIPYGAW FHKEQVGGWV TEYGNLLTFA 400
    TVRGAAHMVP YAEPSRALHM FSSFMNGRRL PNKPDLKSST DD 442
    Length:442
    Mass (Da):49,774
    Last modified:June 1, 2003 - v1
    Checksum:i787C9B71A2D50294
    GO

    Sequence cautioni

    The sequence AAD28662.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC007268 Genomic DNA. Translation: AAD28662.1. Sequence problems.
    CP002685 Genomic DNA. Translation: AEC06202.1.
    BT004306 mRNA. Translation: AAO42304.1.
    PIRiD84503.
    RefSeqiNP_178937.2. NM_126893.4. [Q84W27-1]
    UniGeneiAt.40719.

    Genome annotation databases

    EnsemblPlantsiAT2G12480.1; AT2G12480.1; AT2G12480. [Q84W27-1]
    GeneIDi815721.
    KEGGiath:AT2G12480.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC007268 Genomic DNA. Translation: AAD28662.1 . Sequence problems.
    CP002685 Genomic DNA. Translation: AEC06202.1 .
    BT004306 mRNA. Translation: AAO42304.1 .
    PIRi D84503.
    RefSeqi NP_178937.2. NM_126893.4. [Q84W27-1 ]
    UniGenei At.40719.

    3D structure databases

    ProteinModelPortali Q84W27.
    SMRi Q84W27. Positions 27-431.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    MEROPSi S10.A33.

    Proteomic databases

    PaxDbi Q84W27.
    PRIDEi Q84W27.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G12480.1 ; AT2G12480.1 ; AT2G12480 . [Q84W27-1 ]
    GeneIDi 815721.
    KEGGi ath:AT2G12480.

    Organism-specific databases

    TAIRi AT2G12480.

    Phylogenomic databases

    eggNOGi COG2939.
    HOGENOMi HOG000198295.
    InParanoidi Q84W27.
    KOi K16297.
    PhylomeDBi Q84W27.

    Enzyme and pathway databases

    BioCyci ARA:AT2G12480-MONOMER.
    ARA:GQT-2236-MONOMER.

    Gene expression databases

    Genevestigatori Q84W27.

    Family and domain databases

    Gene3Di 3.40.50.1820. 1 hit.
    InterProi IPR029058. AB_hydrolase.
    IPR001563. Peptidase_S10.
    IPR018202. Peptidase_S10_AS.
    [Graphical view ]
    PANTHERi PTHR11802. PTHR11802. 1 hit.
    Pfami PF00450. Peptidase_S10. 1 hit.
    [Graphical view ]
    PRINTSi PR00724. CRBOXYPTASEC.
    SUPFAMi SSF53474. SSF53474. 1 hit.
    PROSITEi PS00131. CARBOXYPEPT_SER_SER. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family."
      Fraser C.M., Rider L.W., Chapple C.
      Plant Physiol. 138:1136-1148(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, TISSUE SPECIFICITY, NOMENCLATURE.

    Entry informationi

    Entry nameiSCP43_ARATH
    AccessioniPrimary (citable) accession number: Q84W27
    Secondary accession number(s): Q9SHU3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 6, 2007
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Peptidase families
      Classification of peptidase families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3