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Q84W27 (SCP43_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Serine carboxypeptidase-like 43

EC=3.4.16.-
Gene names
Name:SCPL43
Ordered Locus Names:At2g12480
ORF Names:T27D6.5
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length442 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Probable carboxypeptidase By similarity.

Subcellular location

Secreted Potential.

Tissue specificity

Expression not detected. Ref.4

Sequence similarities

Belongs to the peptidase S10 family.

Sequence caution

The sequence AAD28662.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Cellular componentSecreted
   Coding sequence diversityAlternative splicing
   DomainSignal
   Molecular functionCarboxypeptidase
Hydrolase
Protease
   PTMDisulfide bond
Glycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processproteolysis

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentextracellular region

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionserine-type carboxypeptidase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Alternative products

This entry describes 1 isoform produced by alternative splicing. [Select]

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q84W27-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323 Potential
Chain24 – 442419Serine carboxypeptidase-like 43
PRO_0000274658

Sites

Active site1781 By similarity
Active site3501 By similarity
Active site4071 By similarity

Amino acid modifications

Glycosylation1371N-linked (GlcNAc...) Potential
Glycosylation2531N-linked (GlcNAc...) Potential
Glycosylation3021N-linked (GlcNAc...) Potential
Glycosylation3181N-linked (GlcNAc...) Potential
Disulfide bond86 ↔ 313 By similarity
Disulfide bond246 ↔ 258 Potential

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 787C9B71A2D50294

FASTA44249,774
        10         20         30         40         50         60 
MVSSRAVVMA IMVLVTVQWL VFAEGYPEED LVARLPGQPN VGFRQFAGYV DVDSENGRSL 

        70         80         90        100        110        120 
FYYYVEAVKE PDTKPLTLWL NGGPGCSSVG GGAFTELGPF YPTGDGRGLR LNSMSWNKAS 

       130        140        150        160        170        180 
NLLFVESPAG VGWSYSNRSS DYNTGDKSTV NDMLVFLLRW FNKFPELKSR DLFLTGESYA 

       190        200        210        220        230        240 
GHYIPQLADV ILSYNSRSSG FKFNVKGIAI GNPLLKLDRD FAAAYEYFWS HGMISDEVRL 

       250        260        270        280        290        300 
TIMNQCDFAN PKNMSNACIY AIVESSVLTE YINSYHILLD VCYPSIVQQE LRLKKMNALH 

       310        320        330        340        350        360 
ANRTRLPYEW TMCSNRLNYS GIDGYIDMLP SLKRIIQNQT PVWIFSGDQD SVIPLQSSRT 

       370        380        390        400        410        420 
LVRELAEDLN FKTTIPYGAW FHKEQVGGWV TEYGNLLTFA TVRGAAHMVP YAEPSRALHM 

       430        440 
FSSFMNGRRL PNKPDLKSST DD 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana."
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. expand/collapse author list , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.
Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family."
Fraser C.M., Rider L.W., Chapple C.
Plant Physiol. 138:1136-1148(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, TISSUE SPECIFICITY, NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC007268 Genomic DNA. Translation: AAD28662.1. Sequence problems.
CP002685 Genomic DNA. Translation: AEC06202.1.
BT004306 mRNA. Translation: AAO42304.1.
PIRD84503.
RefSeqNP_178937.2. NM_126893.4.
UniGeneAt.40719.

3D structure databases

ProteinModelPortalQ84W27.
SMRQ84W27. Positions 27-431.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

MEROPSS10.A33.

Proteomic databases

PaxDbQ84W27.
PRIDEQ84W27.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT2G12480.1; AT2G12480.1; AT2G12480. [Q84W27-1]
GeneID815721.
KEGGath:AT2G12480.

Organism-specific databases

TAIRAT2G12480.

Phylogenomic databases

eggNOGCOG2939.
HOGENOMHOG000198295.
InParanoidQ84W27.
KOK16297.
PhylomeDBQ84W27.
ProtClustDBCLSN2918661.

Enzyme and pathway databases

BioCycARA:AT2G12480-MONOMER.
ARA:GQT-2236-MONOMER.

Gene expression databases

GenevestigatorQ84W27.

Family and domain databases

InterProIPR001563. Peptidase_S10.
IPR018202. Peptidase_S10_AS.
[Graphical view]
PANTHERPTHR11802. PTHR11802. 1 hit.
PfamPF00450. Peptidase_S10. 1 hit.
[Graphical view]
PRINTSPR00724. CRBOXYPTASEC.
PROSITEPS00131. CARBOXYPEPT_SER_SER. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSCP43_ARATH
AccessionPrimary (citable) accession number: Q84W27
Secondary accession number(s): Q9SHU3
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: June 1, 2003
Last modified: April 16, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Peptidase families

Classification of peptidase families and list of entries

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names