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Q84W27

- SCP43_ARATH

UniProt

Q84W27 - SCP43_ARATH

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Protein
Serine carboxypeptidase-like 43
Gene
SCPL43, At2g12480, T27D6.5
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Probable carboxypeptidase By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei178 – 1781 By similarity
Active sitei350 – 3501 By similarity
Active sitei407 – 4071 By similarity

GO - Molecular functioni

  1. serine-type carboxypeptidase activity Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Carboxypeptidase, Hydrolase, Protease

Enzyme and pathway databases

BioCyciARA:AT2G12480-MONOMER.
ARA:GQT-2236-MONOMER.

Protein family/group databases

MEROPSiS10.A33.

Names & Taxonomyi

Protein namesi
Recommended name:
Serine carboxypeptidase-like 43 (EC:3.4.16.-)
Gene namesi
Name:SCPL43
Ordered Locus Names:At2g12480
ORF Names:T27D6.5
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 2

Organism-specific databases

TAIRiAT2G12480.

Subcellular locationi

Secreted Reviewed prediction

GO - Cellular componenti

  1. extracellular region Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323 Reviewed prediction
Add
BLAST
Chaini24 – 442419Serine carboxypeptidase-like 43
PRO_0000274658Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi86 ↔ 313 By similarity
Glycosylationi137 – 1371N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi246 ↔ 258 Reviewed prediction
Glycosylationi253 – 2531N-linked (GlcNAc...) Reviewed prediction
Glycosylationi302 – 3021N-linked (GlcNAc...) Reviewed prediction
Glycosylationi318 – 3181N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ84W27.
PRIDEiQ84W27.

Expressioni

Tissue specificityi

Expression not detected.1 Publication

Gene expression databases

GenevestigatoriQ84W27.

Structurei

3D structure databases

ProteinModelPortaliQ84W27.
SMRiQ84W27. Positions 27-431.

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase S10 family.

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG2939.
HOGENOMiHOG000198295.
InParanoidiQ84W27.
KOiK16297.
PhylomeDBiQ84W27.

Family and domain databases

Gene3Di3.40.50.1820. 1 hit.
InterProiIPR029058. AB_hydrolase.
IPR001563. Peptidase_S10.
IPR018202. Peptidase_S10_AS.
[Graphical view]
PANTHERiPTHR11802. PTHR11802. 1 hit.
PfamiPF00450. Peptidase_S10. 1 hit.
[Graphical view]
PRINTSiPR00724. CRBOXYPTASEC.
SUPFAMiSSF53474. SSF53474. 1 hit.
PROSITEiPS00131. CARBOXYPEPT_SER_SER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 1 isoform i produced by alternative splicing. Align

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q84W27-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MVSSRAVVMA IMVLVTVQWL VFAEGYPEED LVARLPGQPN VGFRQFAGYV    50
DVDSENGRSL FYYYVEAVKE PDTKPLTLWL NGGPGCSSVG GGAFTELGPF 100
YPTGDGRGLR LNSMSWNKAS NLLFVESPAG VGWSYSNRSS DYNTGDKSTV 150
NDMLVFLLRW FNKFPELKSR DLFLTGESYA GHYIPQLADV ILSYNSRSSG 200
FKFNVKGIAI GNPLLKLDRD FAAAYEYFWS HGMISDEVRL TIMNQCDFAN 250
PKNMSNACIY AIVESSVLTE YINSYHILLD VCYPSIVQQE LRLKKMNALH 300
ANRTRLPYEW TMCSNRLNYS GIDGYIDMLP SLKRIIQNQT PVWIFSGDQD 350
SVIPLQSSRT LVRELAEDLN FKTTIPYGAW FHKEQVGGWV TEYGNLLTFA 400
TVRGAAHMVP YAEPSRALHM FSSFMNGRRL PNKPDLKSST DD 442
Length:442
Mass (Da):49,774
Last modified:June 1, 2003 - v1
Checksum:i787C9B71A2D50294
GO

Sequence cautioni

The sequence AAD28662.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC007268 Genomic DNA. Translation: AAD28662.1. Sequence problems.
CP002685 Genomic DNA. Translation: AEC06202.1.
BT004306 mRNA. Translation: AAO42304.1.
PIRiD84503.
RefSeqiNP_178937.2. NM_126893.4. [Q84W27-1]
UniGeneiAt.40719.

Genome annotation databases

EnsemblPlantsiAT2G12480.1; AT2G12480.1; AT2G12480. [Q84W27-1]
GeneIDi815721.
KEGGiath:AT2G12480.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC007268 Genomic DNA. Translation: AAD28662.1 . Sequence problems.
CP002685 Genomic DNA. Translation: AEC06202.1 .
BT004306 mRNA. Translation: AAO42304.1 .
PIRi D84503.
RefSeqi NP_178937.2. NM_126893.4. [Q84W27-1 ]
UniGenei At.40719.

3D structure databases

ProteinModelPortali Q84W27.
SMRi Q84W27. Positions 27-431.
ModBasei Search...
MobiDBi Search...

Protein family/group databases

MEROPSi S10.A33.

Proteomic databases

PaxDbi Q84W27.
PRIDEi Q84W27.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT2G12480.1 ; AT2G12480.1 ; AT2G12480 . [Q84W27-1 ]
GeneIDi 815721.
KEGGi ath:AT2G12480.

Organism-specific databases

TAIRi AT2G12480.

Phylogenomic databases

eggNOGi COG2939.
HOGENOMi HOG000198295.
InParanoidi Q84W27.
KOi K16297.
PhylomeDBi Q84W27.

Enzyme and pathway databases

BioCyci ARA:AT2G12480-MONOMER.
ARA:GQT-2236-MONOMER.

Gene expression databases

Genevestigatori Q84W27.

Family and domain databases

Gene3Di 3.40.50.1820. 1 hit.
InterProi IPR029058. AB_hydrolase.
IPR001563. Peptidase_S10.
IPR018202. Peptidase_S10_AS.
[Graphical view ]
PANTHERi PTHR11802. PTHR11802. 1 hit.
Pfami PF00450. Peptidase_S10. 1 hit.
[Graphical view ]
PRINTSi PR00724. CRBOXYPTASEC.
SUPFAMi SSF53474. SSF53474. 1 hit.
PROSITEi PS00131. CARBOXYPEPT_SER_SER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family."
    Fraser C.M., Rider L.W., Chapple C.
    Plant Physiol. 138:1136-1148(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, TISSUE SPECIFICITY, NOMENCLATURE.

Entry informationi

Entry nameiSCP43_ARATH
AccessioniPrimary (citable) accession number: Q84W27
Secondary accession number(s): Q9SHU3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: June 1, 2003
Last modified: June 11, 2014
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi