Unreviewed, UniProtKB/TrEMBL Q84W01 (Q84W01_ARATH)

Names and origin

Protein names

Submitted name:
    At5g26870 EMBL AAO42827.1

Gene names

Ordered Locus Names:

At5g26870 TAIR At5g26870

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	121 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subcellular location	Nucleus By similarity. RuleBase RU000476V3
Sequence similarities	Contains 1 MADS-box domain. RuleBase RU000476V3 Spearmint SPM002100

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000476V3 Spearmint SPM002100
Cellular component	Nucleus RuleBase RU000476V3 Spearmint SPM002100
Ligand	DNA-binding RuleBase RU000476V3 Spearmint SPM002100
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular response to nitrogen starvation Inferred from expression pattern. Source: TAIR regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	protein binding Inferred from physical interaction. Source: IntAct sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
CALM	P62157	1	EBI-1238923,EBI-397403	From a different organism.
CAM1	P25854	1	EBI-1238923,EBI-1235664

Sequences

	Sequence		Length	Mass (Da)
	Q84W01-1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 8C5032B22C25C0FE	FASTA	121	14,265
	10 20 30 40 50 60 MFKKALELST LCDIEVCVIL YSRDGELIKT WPEDQSKVRD MAERFSKLHE RERRKKRTNL 70 80 90 100 110 120 SLFLRKKILD NSKLSEKVLE MKDSLESGLR VLQDKLLLLQ PEKNQTELGQ IPVINNGQNH W

References

[1]

"Arabidopsis ORF clones." Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Chan M.M., Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M. , Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	BT004581 mRNA. Translation: AAO42827.1.
IPI	IPI00543496.
RefSeq	NP_198039.1.
UniGene	At.19311
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	Q84W01. 2 interactions.
Genome annotation databases
GeneID	832745.
KEGG	ath:AT5G26870.
NMPDR	fig|3702.1.peg.24888.
Organism-specific databases
TAIR	At5g26870.
Family and domain databases
InterPro	IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF00319. SRF-TF. 1 hit. [Graphical view]
SMART	SM00432. MADS. 1 hit. [Graphical view]
PROSITE	PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q84W01_ARATH

Accession

Primary (citable) accession number: Q84W01

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	April 14, 2009
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)