Q84VX1 (Q84VX1_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
At4g38650 EMBL AAO42885.1

Submitted name:
Glycosyl hydrolase family 10 protein EMBL AEE86958.1
Submitted name:
Putative uncharacterized protein At4g38650 EMBL BAE99535.1

Gene names

Ordered Locus Names:	At4g38650 TAIR At4g38650
ORF Names:	AT4G38650 EMBL AEE86958.1

Organism

Arabidopsis thaliana (Mouse-ear cress) EMBL AAO42885.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	562 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 10 (cellulase F) family. RuleBase RU003432

Ontologies

Keywords
Molecular function	Glycosidase RuleBase RU003432 Hydrolase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q84VX1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 235051BE1128D89A	FASTA	562	63,470
	10 20 30 40 50 60 MKCSSMCCLI LLALSLLTAF TLASSSNGID GPFYDSTAYT ECRAEAEKPL YNGGMLKDQK 70 80 90 100 110 120 PSVPGKDSLT GIGAHYTPTY ILHNLTQNTI YCFSIWVKIE AGAASAHVRA RLRADNATLN 130 140 150 160 170 180 CVGSVTAKHG CWSFLKGGFL LDSPCKQSIL FFETSEDDGK IQLQVTSASL QPFTQEQWRN 190 200 210 220 230 240 NQDYFINTAR KRAVTIHVSK ENGESVEGAE VTVEQISKDF SIGSAISKTI LGNIPYQEWF 250 260 270 280 290 300 VKRFDATVFE NELKWYATEP DQGKLNYTLA DKMMNFVRAN RIIARGHNIF WEDPKYNPDW 310 320 330 340 350 360 VRNLTGEDLR SAVNRRIKSL MTRYRGEFVH WDVSNEMLHF DFYETRLGKN ASYGFFAAAR 370 380 390 400 410 420 EIDSLATLFF NDFNVVETCS DEKSTVDEYI ARVRELQRYD GVRMDGIGLE GHFTTPNVAL 430 440 450 460 470 480 MRAILDKLAT LQLPIWLTEI DISSSLDHRS QAIYLEQVLR EGFSHPSVNG IMLWTALHPN 490 500 510 520 530 540 GCYQMCLTDD KFRNLPAGDV VDQKLLEWKT GEVKATTDDH GSFSFFGFLG EYRVGIMYQG 550 560 KTVNSSFSLS QGPETKHVRL QI

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana." EU, CSHL and WU Arabidopsis Sequencing Project Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B. , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R. Nature 402:769-777(1999) [PubMed: 10617198] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	"Arabidopsis ORF clones." Cheuk R., Chen H., Kim C.J., Shinn P., Bowser L., Carninci P., Chan M.M., Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M. , Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[4]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BT004639 mRNA. Translation: AAO42885.1. CP002687 Genomic DNA. Translation: AEE86958.1. AK227537 mRNA. Translation: BAE99535.1.
IPI	IPI00533832.
RefSeq	NP_195577.2. NM_120026.4.
UniGene	At.31160.
3D structure databases
ProteinModelPortal	Q84VX1.
SMR	Q84VX1. Positions 217-504.
ModBase	Search...
Protein family/group databases
CAZy	CBM22. Carbohydrate-Binding Module Family 22. GH10. Glycoside Hydrolase Family 10.
Proteomic databases
PRIDE	Q84VX1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT4G38650.1; AT4G38650.1; AT4G38650.
GeneID	830021.
GenomeReviews	Gene locus AT4G38650 in contig CT486007_GR.
KEGG	ath:AT4G38650.
NMPDR	fig|3702.1.peg.21988.
Organism-specific databases
TAIR	At4g38650.
Phylogenomic databases
eggNOG	euNOG04637.
HOGENOM	HBG318881.
InParanoid	Q84VX1.
OMA	PLATLFM.
PhylomeDB	Q84VX1.
ProtClustDB	CLSN2681015.
Gene expression databases
Genevestigator	Q84VX1.
Family and domain databases
InterPro	IPR008979. Galactose-bd-like. IPR001000. Glyco_hydro_10. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
Pfam	PF00331. Glyco_hydro_10. 1 hit. [Graphical view]
PRINTS	PR00134. GLHYDRLASE10.
SMART	SM00633. Glyco_10. 1 hit. [Graphical view]
SUPFAM	SSF49785. Gal_bind_like. 1 hit. SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q84VX1_ARATH

Accession

Primary (citable) accession number: Q84VX1

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	January 25, 2012
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)