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Q84VX0

- RFS1_ARATH

UniProt

Q84VX0 - RFS1_ARATH

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Protein

Probable galactinol--sucrose galactosyltransferase 1

Gene
RFS1, RS1, SIP1, At1g55740, F20N2.12, F20N2.14
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Transglycosidase operating by a ping-pong reaction mechanism. Involved in the synthesis of raffinose, a major soluble carbohydrate in seeds, roots and tubers By similarity.

Catalytic activityi

Alpha-D-galactosyl-(1->3)-1D-myo-inositol + sucrose = myo-inositol + raffinose.

GO - Molecular functioni

  1. galactinol-sucrose galactosyltransferase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism

Enzyme and pathway databases

BioCyciARA:AT1G55740-MONOMER.

Protein family/group databases

CAZyiGH36. Glycoside Hydrolase Family 36.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable galactinol--sucrose galactosyltransferase 1 (EC:2.4.1.82)
Alternative name(s):
Protein SEED IMBIBITION 1
Raffinose synthase 1
Gene namesi
Name:RFS1
Synonyms:RS1, SIP1
Ordered Locus Names:At1g55740
ORF Names:F20N2.12, F20N2.14
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G55740.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 754754Probable galactinol--sucrose galactosyltransferase 1PRO_0000270157Add
BLAST

Proteomic databases

PaxDbiQ84VX0.
PRIDEiQ84VX0.

Expressioni

Inductioni

Not induced by oxidative stress.1 Publication

Gene expression databases

GenevestigatoriQ84VX0.

Interactioni

Protein-protein interaction databases

BioGridi27248. 1 interaction.
IntActiQ84VX0. 1 interaction.
STRINGi3702.AT1G55740.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ84VX0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG06986.
HOGENOMiHOG000237551.
InParanoidiQ84VX0.
KOiK06617.
OMAiTQFLIVE.
PhylomeDBiQ84VX0.

Family and domain databases

Gene3Di3.20.20.70. 2 hits.
InterProiIPR013785. Aldolase_TIM.
IPR017853. Glycoside_hydrolase_SF.
IPR008811. Glycosyl_hydrolases_36.
[Graphical view]
PfamiPF05691. Raffinose_syn. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 3 hits.

Sequencei

Sequence statusi: Complete.

Q84VX0-1 [UniParc]FASTAAdd to Basket

« Hide

MTVGAGISVT DSDLVVLGHR VLHGVPENVL VTPASGNALI DGAFIGVTSD    50
QTGSHRVFSL GKLEDLRFMC VFRFKLWWMT QRMGTNGKEI PCETQFLIVE 100
ANQGSDLGGR DQSSSYVVFL PILEGDFRAV LQGNEANELE ICLESGDPTV 150
DQFEGSHLVF VAAGSDPFDV ITKAVKAVEQ HLQTFSHRER KKMPDMLNWF 200
GWCTWDAFYT NVTAKDVKQG LESLKAGGVT PKFVIIDDGW QSVGMDETSV 250
EFNADNAANF ANRLTHIKEN HKFQKDGKEG HRVDDPSLSL GHVITDIKSN 300
NSLKYVYVWH AITGYWGGVK PGVSGMEHYE SKVAYPVSSP GVMSSENCGC 350
LESITKNGLG LVNPEKVFSF YNDLHSYLAS VGVDGVKVDV QNILETLGAG 400
HGGRVKLAKK YHQALEASIS RNFPDNGIIS CMSHNTDGLY SAKKTAVIRA 450
SDDFWPRDPA SHTIHIASVA YNTLFLGEFM QPDWDMFHSL HPMAEYHAAA 500
RAVGGCAIYV SDKPGQHDFN LLRKLVLRDG SILRAKLPGR PTSDCFFSDP 550
VRDNKSLLKI WNLNEFTGVI GVFNCQGAGW CKNEKRYLIH DQEPGTISGC 600
VRTNDVHYLH KVAAFEWTGD SIVYSHLRGE LVYLPKDTSL PVTLMPREYE 650
VFTVVPVKEF SDGSKFAPVG LMEMFNSGGA IVSLRYDDEG TKFVVRMKLR 700
GSGLVGVYSS VRRPRSVTVD SDDVEYRYEP ESGLVTFTLG VPEKELYLWD 750
VVIQ 754
Length:754
Mass (Da):83,477
Last modified:June 1, 2003 - v1
Checksum:iC57DB5076DADA8AD
GO

Sequence cautioni

The sequence AAF79504.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At1g55730 and At1g55740.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC002328 Genomic DNA. Translation: AAF79504.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE33292.1.
BT004640 mRNA. Translation: AAO42886.1.
AK227977 mRNA. Translation: BAE99943.1.
PIRiC96599.
RefSeqiNP_175970.1. NM_104450.3.
UniGeneiAt.47524.
At.67212.

Genome annotation databases

EnsemblPlantsiAT1G55740.1; AT1G55740.1; AT1G55740.
GeneIDi842023.
KEGGiath:AT1G55740.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC002328 Genomic DNA. Translation: AAF79504.1 . Sequence problems.
CP002684 Genomic DNA. Translation: AEE33292.1 .
BT004640 mRNA. Translation: AAO42886.1 .
AK227977 mRNA. Translation: BAE99943.1 .
PIRi C96599.
RefSeqi NP_175970.1. NM_104450.3.
UniGenei At.47524.
At.67212.

3D structure databases

ProteinModelPortali Q84VX0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 27248. 1 interaction.
IntActi Q84VX0. 1 interaction.
STRINGi 3702.AT1G55740.1-P.

Protein family/group databases

CAZyi GH36. Glycoside Hydrolase Family 36.

Proteomic databases

PaxDbi Q84VX0.
PRIDEi Q84VX0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT1G55740.1 ; AT1G55740.1 ; AT1G55740 .
GeneIDi 842023.
KEGGi ath:AT1G55740.

Organism-specific databases

TAIRi AT1G55740.

Phylogenomic databases

eggNOGi NOG06986.
HOGENOMi HOG000237551.
InParanoidi Q84VX0.
KOi K06617.
OMAi TQFLIVE.
PhylomeDBi Q84VX0.

Enzyme and pathway databases

BioCyci ARA:AT1G55740-MONOMER.

Gene expression databases

Genevestigatori Q84VX0.

Family and domain databases

Gene3Di 3.20.20.70. 2 hits.
InterProi IPR013785. Aldolase_TIM.
IPR017853. Glycoside_hydrolase_SF.
IPR008811. Glycosyl_hydrolases_36.
[Graphical view ]
Pfami PF05691. Raffinose_syn. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 3 hits.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Galactinol and raffinose constitute a novel function to protect plants from oxidative damage."
    Nishizawa A., Yabuta Y., Shigeoka S.
    Plant Physiol. 147:1251-1263(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION BY OXIDATIVE STRESS, GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiRFS1_ARATH
AccessioniPrimary (citable) accession number: Q84VX0
Secondary accession number(s): Q9LFZ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 9, 2007
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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