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Protein

Protein phosphatase 2C 35

Gene

XB15

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Protein phosphatase that acts on XA21 pathogen recognition receptor. Negatively regulates cell death and XA21-mediated innate immunity.1 Publication

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi262 – 2621Manganese 1By similarity
Metal bindingi262 – 2621Manganese 2By similarity
Metal bindingi263 – 2631Manganese 1; via carbonyl oxygenBy similarity
Metal bindingi558 – 5581Manganese 2By similarity
Metal bindingi621 – 6211Manganese 2By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Biological processi

Plant defense

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Protein phosphatase 2C 35 (EC:3.1.3.16)
Short name:
OsPP2C35
Alternative name(s):
XA21-binding protein 15
Gene namesi
Name:XB15
Ordered Locus Names:Os03g0821300, LOC_Os03g60650
ORF Names:OJ1754_E06.28, OsJ_012575
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 3

Organism-specific databases

GrameneiQ84T94.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Disruption phenotypei

Enhanced resistance to Xantomonas oryzae pv. oryzae (Xoo), expression of defense-related genes and cell death (necrotic lesions).1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 639639Protein phosphatase 2C 35PRO_0000363282Add
BLAST

Proteomic databases

PRIDEiQ84T94.

Interactioni

Subunit structurei

Interacts with XA21 (via juxtamembrane and kinase domains).1 Publication

Protein-protein interaction databases

DIPiDIP-46055N.
STRINGi39947.LOC_Os03g60650.1.

Structurei

3D structure databases

ProteinModelPortaliQ84T94.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini227 – 630404PPM-type phosphatasePROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi60 – 689Poly-Ala
Compositional biasi218 – 2258Poly-Ala

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PPM-type phosphatase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000239375.
InParanoidiQ84T94.
OMAiARTEKFQ.

Family and domain databases

Gene3Di3.60.40.10. 2 hits.
InterProiIPR015655. PP2C.
IPR001932. PPM-type_phosphatase_dom.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 2 hits.
PROSITEiPS51746. PPM_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q84T94-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNSLACFCC GGGAGGRGGR HVAPAALPSD PAYDEGLGHS FCYVRPDKFV
60 70 80 90 100
VPFSADDLVA DAKAAAAAEG EATTFRAISG AALSANVSTP LSTSVLLLMP
110 120 130 140 150
EESSASATAS SGFESSESFA AVPLQPVPRF SSGPISAPFS GGFMSGPLER
160 170 180 190 200
GFQSGPLDAA LLSGPLPGTA TSGRMGGAVP ALRRSLSHGG RRLRNFTRAL
210 220 230 240 250
LARTEKFQDS ADLGSPDAAA AAVAACGGDP CGLQWAQGKA GEDRVHVVVS
260 270 280 290 300
EERGWVFVGI YDGFNGPDAT DFLVSNLYAA VHRELRGLLW DQREQNVQHD
310 320 330 340 350
QRPDQPGSAP STTASDNQDQ WGRRRRTRRS RPPRGADDDQ RRWKCEWEQE
360 370 380 390 400
RDCSNLKPPT QQRLRCNSEN DHVAVLKALT RALHRTEEAY LDIADKMVGE
410 420 430 440 450
FPELALMGSC VLAMLMKGED MYIMNVGDSR AVLATMDSVD LEQISQGSFD
460 470 480 490 500
GSVGDCPPCL SAVQLTSDHS TSVEEEVIRI RNEHPDDPSA ISKDRVKGSL
510 520 530 540 550
KVTRAFGAGF LKQPKWNDAL LEMFRIDYVG SSPYISCNPS LFHHKLSTRD
560 570 580 590 600
RFLILSSDGL YQYFTNEEAV AQVEMFIATT PEGDPAQHLV EEVLFRAANK
610 620 630
AGMDFHELIE IPHGDRRRYH DDVSVIVISL EGRIWRSCV
Length:639
Mass (Da):69,180
Last modified:June 1, 2003 - v1
Checksum:iE64A0AED1838C00F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti12 – 132GG → CC in EAZ29092 (PubMed:15685292).Curated
Sequence conflicti23 – 231A → V in AK071722 (PubMed:12869764).Curated
Sequence conflicti402 – 4021P → T in AK071722 (PubMed:12869764).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC104433 Genomic DNA. Translation: AAO65883.1.
DP000009 Genomic DNA. Translation: ABF99594.1.
AP008209 Genomic DNA. Translation: BAF13640.1.
CM000140 Genomic DNA. Translation: EAZ29092.1.
AK071722 mRNA. No translation available.
AJ575237 mRNA. Translation: CAE00873.1.
RefSeqiNP_001051726.1. NM_001058261.1.
UniGeneiOs.19321.

Genome annotation databases

EnsemblPlantsiOS03T0821300-01; OS03T0821300-01; OS03G0821300.
GeneIDi4334600.
KEGGiosa:4334600.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC104433 Genomic DNA. Translation: AAO65883.1.
DP000009 Genomic DNA. Translation: ABF99594.1.
AP008209 Genomic DNA. Translation: BAF13640.1.
CM000140 Genomic DNA. Translation: EAZ29092.1.
AK071722 mRNA. No translation available.
AJ575237 mRNA. Translation: CAE00873.1.
RefSeqiNP_001051726.1. NM_001058261.1.
UniGeneiOs.19321.

3D structure databases

ProteinModelPortaliQ84T94.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-46055N.
STRINGi39947.LOC_Os03g60650.1.

Proteomic databases

PRIDEiQ84T94.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS03T0821300-01; OS03T0821300-01; OS03G0821300.
GeneIDi4334600.
KEGGiosa:4334600.

Organism-specific databases

GrameneiQ84T94.

Phylogenomic databases

eggNOGiCOG0631.
HOGENOMiHOG000239375.
InParanoidiQ84T94.
OMAiARTEKFQ.

Family and domain databases

Gene3Di3.60.40.10. 2 hits.
InterProiIPR015655. PP2C.
IPR001932. PPM-type_phosphatase_dom.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 2 hits.
PROSITEiPS51746. PPM_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  6. "Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development."
    Ye R., Yao Q.-H., Xu Z.-H., Xue H.-W.
    Plant J. 38:348-357(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 486-639.
    Tissue: Embryo.
  7. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
    Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
    BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  8. "Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity."
    Park C.-J., Peng Y., Chen X., Dardick C., Ruan D., Bart R., Canlas P.E., Ronald P.C.
    PLoS Biol. 6:E231-E231(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, SUBCELLULAR LOCATION, DISRUPTION PHENOTYPE, INTERACTION WITH XA21.

Entry informationi

Entry nameiP2C35_ORYSJ
AccessioniPrimary (citable) accession number: Q84T94
Secondary accession number(s): A3AP53, Q70KS9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: June 1, 2003
Last modified: July 22, 2015
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.