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Q84SS3 (Q84SS3_ORYSJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Putative membrane protein EMBL AAO73245.1

TMS membrane family protein, putative, expressed EMBL ABF97019.1

cDNA clone:J013093K20, full insert sequence EMBL BAG90227.1
Gene names
Name:OSJNBb0047D08.30 EMBL AAO73245.1
Synonyms:Os03g0454100 EMBL BAF12390.1
Ordered Locus Names:LOC_Os03g34300 EMBL ABF97019.1
ORF Names:OsJ_11423 EMBL EEE59340.1
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length417 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentmembrane

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q84SS3 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 56B29638C69787C0

FASTA41746,242
        10         20         30         40         50         60 
MWCASCLASA CAGCTCNLCA SALSAISRRS ARLAYCGLFA ASLILSFLMR QFATPLLKQI 

        70         80         90        100        110        120 
PWINTFDYTQ PDEWFQMNAV LRVSLGNFLF FAIFALMMIG VKDQNDRRDA WHHGGWIAKI 

       130        140        150        160        170        180 
VVWVVLIVLM FCVPNVVITI YEVLSKFGSG LFLLVQVVML LDFTNNWNDS WIEKDEQKWE 

       190        200        210        220        230        240 
IALLVVTVVC YLSTFAFSGL LFTWFNPSGH DCGLNVFFIT MTIILAFAFA IIALHPQVNG 

       250        260        270        280        290        300 
SVMPASVISV YCAYLCYTSL SSEPDDYACN GLHRHSKQVS MSALILGMLT TVLSVVYSAV 

       310        320        330        340        350        360 
RAGSSTTFLS PPSSPRSGIK NPLLGDDNVE AGKSNSKEID ARPVSYSYTF FHVIFALASM 

       370        380        390        400        410 
YSAMLLTGWT SAASDSSELM DVGWTTVWVR ICTEWATAAL YIWTLVAPLL FPDRDFS 

« Hide

References

« Hide 'large scale' references
[1]"Oryza sativa chromosome 3 BAC OSJNBb0047D08 genomic sequence."
Buell C.R., Yuan Q., Ouyang S., Liu J., Gansberger K., Jones K.M., Overton II L.L., Tsitrin T., Kim M.M., Bera J.J., Jin S.S., Fadrosh D.W., Tallon L.J., Koo H., Zismann V., Hsiao J., Blunt S., Vanaken S.S. expand/collapse author list , Riedmuller S.B., Utterback T.T., Feldblyum T.V., Yang Q.Q., Haas B.J., Suh B.B., Peterson J.J., Quackenbush J., White O., Salzberg S.L., Fraser C.M.
Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice."
Kikuchi S., Satoh K., Nagata T., Kawagashira N., Doi K., Kishimoto N., Yazaki J., Ishikawa M., Yamada H., Ooka H., Hotta I., Kojima K., Namiki T., Ohneda E., Yahagi W., Suzuki K., Li C., Ohtsuki K. expand/collapse author list , Shishiki T., Otomo Y., Murakami K., Iida Y., Sugano S., Fujimura T., Suzuki Y., Tsunoda Y., Kurosaki T., Kodama T., Masuda H., Kobayashi M., Xie Q., Lu M., Narikawa R., Sugiyama A., Mizuno K., Yokomizo S., Niikura J., Ikeda R., Ishibiki J., Kawamata M., Yoshimura A., Miura J., Kusumegi T., Oka M., Ryu R., Ueda M., Matsubara K., Kawai J., Carninci P., Adachi J., Aizawa K., Arakawa T., Fukuda S., Hara A., Hashidume W., Hayatsu N., Imotani K., Ishii Y., Itoh M., Kagawa I., Kondo S., Konno H., Miyazaki A., Osato N., Ota Y., Saito R., Sasaki D., Sato K., Shibata K., Shinagawa A., Shiraki T., Yoshino M., Hayashizaki Y.
Science 301:376-379(2003)
Cited for: NUCLEOTIDE SEQUENCE.
[3]Buell R.
Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
The rice chromosome 3 sequencing consortium
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. expand/collapse author list , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[5]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[6]"The map-based sequence of the rice genome."
International Rice Genome Sequencing Project
Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N. expand/collapse author list , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T.
Nature 436:793-800(2005)
Cited for: NUCLEOTIDE SEQUENCE.
[7]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[8]"Oryza sativa nipponbare(GA3) genomic DNA, chromosome 3."
IRGSP(International Rice Genome Sequencing Project)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[9]"The Second Rice Annotation Project Meeting (RAP2)."
The Rice Annotation Project (RAP)
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[10]"The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information."
Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T.
Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[11]Buell R., Wing R.A., McCombie W.A., Ouyang S.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[12]"Improved gene annotation of the rice (Oryza sativa) genomes."
Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[13]"Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana."
The Rice Annotation Project (RAP)
Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E. expand/collapse author list , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.
Genome Res. 17:175-183(2007)
Cited for: NUCLEOTIDE SEQUENCE.
[14]"The Rice Annotation Project Database (RAP-DB): 2008 update."
The Rice Annotation Project (RAP)
Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H. expand/collapse author list , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M.
Nucleic Acids Res. 36:D1028-D1033(2008)
Cited for: NUCLEOTIDE SEQUENCE.
[15]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[16]Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC137925 Genomic DNA. Translation: AAO73245.1.
DP000009 Genomic DNA. Translation: ABF97019.1.
AP008209 Genomic DNA. Translation: BAF12390.1.
AK067011 mRNA. Translation: BAG90227.1.
CM000140 Genomic DNA. Translation: EEE59340.1.
RefSeqNP_001050476.1. NM_001057011.1.
UniGeneOs.27680.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS03T0454100-01; OS03T0454100-01; OS03G0454100.
GeneID4333235.
KEGGosa:4333235.

Phylogenomic databases

OMAHIIFAIG.
ProtClustDBCLSN2679769.

Family and domain databases

InterProIPR005016. TMS_TDE.
[Graphical view]
PANTHERPTHR10383. PTHR10383. 1 hit.
PfamPF03348. Serinc. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ84SS3_ORYSJ
AccessionPrimary (citable) accession number: Q84SS3
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: April 16, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)