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Q84SN3

- CDKF3_ORYSJ

UniProt

Q84SN3 - CDKF3_ORYSJ

Protein

Cyclin-dependent kinase F-3

Gene

CDKF-3

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 86 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + a protein = ADP + a phosphoprotein.
    ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei33 – 331ATPPROSITE-ProRule annotation
    Active sitei125 – 1251Proton acceptorPROSITE-ProRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi10 – 189ATPPROSITE-ProRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. cyclin-dependent protein serine/threonine kinase activity Source: UniProtKB-EC
    3. RNA polymerase II carboxy-terminal domain kinase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    Kinase, Serine/threonine-protein kinase, Transferase

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Cyclin-dependent kinase F-3 (EC:2.7.11.22, EC:2.7.11.23)
    Short name:
    CDKF;3
    Alternative name(s):
    Serine/threonine-protein kinase MHK-like protein 1
    Gene namesi
    Name:CDKF-3
    Ordered Locus Names:Os03g0847600, LOC_Os03g63020
    ORF Names:OSJNBb0043P23.8
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 3

    Organism-specific databases

    GrameneiQ84SN3.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 433433Cyclin-dependent kinase F-3PRO_0000296108Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei151 – 1511PhosphoserineBy similarity
    Modified residuei156 – 1561PhosphothreonineBy similarity

    Keywords - PTMi

    Phosphoprotein

    Expressioni

    Inductioni

    Down-regulated by cytokinin.1 Publication

    Structurei

    3D structure databases

    ProteinModelPortaliQ84SN3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini4 – 283280Protein kinasePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 protein kinase domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0515.

    Family and domain databases

    InterProiIPR011009. Kinase-like_dom.
    IPR000719. Prot_kinase_dom.
    IPR002290. Ser/Thr_dual-sp_kinase_dom.
    IPR008271. Ser/Thr_kinase_AS.
    [Graphical view]
    PfamiPF00069. Pkinase. 1 hit.
    [Graphical view]
    SMARTiSM00220. S_TKc. 1 hit.
    [Graphical view]
    SUPFAMiSSF56112. SSF56112. 1 hit.
    PROSITEiPS50011. PROTEIN_KINASE_DOM. 1 hit.
    PS00108. PROTEIN_KINASE_ST. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q84SN3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MERYKVIREI GDGTCGNVFR AYNTETNEIV AVKKMKRKFF QWEECISLRE    50
    VKALQKLNHP NIVKLKEVTM ENHELFFIFE NMECNLYDVI RERQAAFSEE 100
    EIRNFMVQIL QGLAYMHNNG YFHRDLKPEN LLVTDGTVKI ADFGLAREVS 150
    SSPPYTDYVS TRWYRAPEVL LQSSAYTPAI DMWAVGAILA ELFTLSPLFP 200
    GGSETDQLYK ICAVLGTPDH TVWPEGMNLP RSSSFNFFQI PPRNLWELIP 250
    NATLEAIDLI QQLCSWDPRR RPTAEQSLQH PFFNVGNWVP RPLHASHTKT 300
    IETRPNPRLE LNLWDFGTEP EDNYLDLTLS LKPSFPGTDF SNNVPEHTKE 350
    EILLYPGFEN PPVQSGFWPL VASDRPMGDV PAMSSWPQAY VVDGQATLPA 400
    VGFSGSPFGL SPLQPNLFEN RSFATPIRQV NFF 433
    Length:433
    Mass (Da):49,515
    Last modified:June 1, 2003 - v1
    Checksum:i28AC98AE930BDE89
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti120 – 1201G → S in AK066947. (PubMed:12869764)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC099324 Genomic DNA. Translation: AAO73290.1.
    DP000009 Genomic DNA. Translation: ABF99883.1.
    AP008209 Genomic DNA. Translation: BAF13800.1.
    AK066947 mRNA. No translation available.
    RefSeqiNP_001051886.1. NM_001058421.1.
    UniGeneiOs.8119.

    Genome annotation databases

    EnsemblPlantsiOS03T0847600-01; OS03T0847600-01; OS03G0847600.
    OS03T0847600-02; OS03T0847600-02; OS03G0847600.
    GeneIDi4334774.
    KEGGiosa:4334774.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC099324 Genomic DNA. Translation: AAO73290.1 .
    DP000009 Genomic DNA. Translation: ABF99883.1 .
    AP008209 Genomic DNA. Translation: BAF13800.1 .
    AK066947 mRNA. No translation available.
    RefSeqi NP_001051886.1. NM_001058421.1.
    UniGenei Os.8119.

    3D structure databases

    ProteinModelPortali Q84SN3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS03T0847600-01 ; OS03T0847600-01 ; OS03G0847600 .
    OS03T0847600-02 ; OS03T0847600-02 ; OS03G0847600 .
    GeneIDi 4334774.
    KEGGi osa:4334774.

    Organism-specific databases

    Gramenei Q84SN3.

    Phylogenomic databases

    eggNOGi COG0515.

    Family and domain databases

    InterProi IPR011009. Kinase-like_dom.
    IPR000719. Prot_kinase_dom.
    IPR002290. Ser/Thr_dual-sp_kinase_dom.
    IPR008271. Ser/Thr_kinase_AS.
    [Graphical view ]
    Pfami PF00069. Pkinase. 1 hit.
    [Graphical view ]
    SMARTi SM00220. S_TKc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56112. SSF56112. 1 hit.
    PROSITEi PS50011. PROTEIN_KINASE_DOM. 1 hit.
    PS00108. PROTEIN_KINASE_ST. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
      The rice chromosome 3 sequencing consortium
      Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
      , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
      Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    5. "Genome-wide identification and expression analysis of rice cell cycle genes."
      Guo J., Song J., Wang F., Zhang X.S.
      Plant Mol. Biol. 64:349-360(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: INDUCTION, GENE FAMILY.

    Entry informationi

    Entry nameiCDKF3_ORYSJ
    AccessioniPrimary (citable) accession number: Q84SN3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 24, 2007
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 86 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3