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Q84SN3 (CDKF3_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Cyclin-dependent kinase F-3

Short name=CDKF;3
EC=2.7.11.22
EC=2.7.11.23
Alternative name(s):
Serine/threonine-protein kinase MHK-like protein 1
Gene names
Name:CDKF-3
Ordered Locus Names:Os03g0847600, LOC_Os03g63020
ORF Names:OSJNBb0043P23.8
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length433 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

Induction

Down-regulated by cytokinin. Ref.5

Sequence similarities

Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.

Contains 1 protein kinase domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 433433Cyclin-dependent kinase F-3
PRO_0000296108

Regions

Domain4 – 283280Protein kinase
Nucleotide binding10 – 189ATP By similarity

Sites

Active site1251Proton acceptor By similarity
Binding site331ATP By similarity

Amino acid modifications

Modified residue1511Phosphoserine By similarity
Modified residue1561Phosphothreonine By similarity

Experimental info

Sequence conflict1201G → S in AK066947. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Q84SN3 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 28AC98AE930BDE89

FASTA43349,515
        10         20         30         40         50         60 
MERYKVIREI GDGTCGNVFR AYNTETNEIV AVKKMKRKFF QWEECISLRE VKALQKLNHP 

        70         80         90        100        110        120 
NIVKLKEVTM ENHELFFIFE NMECNLYDVI RERQAAFSEE EIRNFMVQIL QGLAYMHNNG 

       130        140        150        160        170        180 
YFHRDLKPEN LLVTDGTVKI ADFGLAREVS SSPPYTDYVS TRWYRAPEVL LQSSAYTPAI 

       190        200        210        220        230        240 
DMWAVGAILA ELFTLSPLFP GGSETDQLYK ICAVLGTPDH TVWPEGMNLP RSSSFNFFQI 

       250        260        270        280        290        300 
PPRNLWELIP NATLEAIDLI QQLCSWDPRR RPTAEQSLQH PFFNVGNWVP RPLHASHTKT 

       310        320        330        340        350        360 
IETRPNPRLE LNLWDFGTEP EDNYLDLTLS LKPSFPGTDF SNNVPEHTKE EILLYPGFEN 

       370        380        390        400        410        420 
PPVQSGFWPL VASDRPMGDV PAMSSWPQAY VVDGQATLPA VGFSGSPFGL SPLQPNLFEN 

       430 
RSFATPIRQV NFF 

« Hide

References

« Hide 'large scale' references
[1]"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
The rice chromosome 3 sequencing consortium
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. expand/collapse author list , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.
[5]"Genome-wide identification and expression analysis of rice cell cycle genes."
Guo J., Song J., Wang F., Zhang X.S.
Plant Mol. Biol. 64:349-360(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: INDUCTION, GENE FAMILY.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC099324 Genomic DNA. Translation: AAO73290.1.
DP000009 Genomic DNA. Translation: ABF99883.1.
AP008209 Genomic DNA. Translation: BAF13800.1.
AK066947 mRNA. No translation available.
RefSeqNP_001051886.1. NM_001058421.1.
UniGeneOs.8119.

3D structure databases

ProteinModelPortalQ84SN3.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS03T0847600-01; OS03T0847600-01; OS03G0847600.
OS03T0847600-02; OS03T0847600-02; OS03G0847600.
GeneID4334774.
KEGGosa:4334774.

Organism-specific databases

GrameneQ84SN3.

Phylogenomic databases

eggNOGCOG0515.
ProtClustDBCLSN2685794.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR002290. Ser/Thr_dual-sp_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMSSF56112. SSF56112. 1 hit.
PROSITEPS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCDKF3_ORYSJ
AccessionPrimary (citable) accession number: Q84SN3
Entry history
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: June 1, 2003
Last modified: April 16, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations