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Protein

NifU-like protein 1, chloroplastic

Gene

NIFU1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
NifU-like protein 1, chloroplastic
Alternative name(s):
OsNifu1
Gene namesi
Name:NIFU1
Ordered Locus Names:Os12g0176200, LOC_Os12g07700
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 12

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 76ChloroplastSequence analysisAdd BLAST76
ChainiPRO_000024761477 – 226NifU-like protein 1, chloroplasticAdd BLAST150

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi116Interchain (with C-119)By similarity
Disulfide bondi119Interchain (with C-116)By similarity

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiQ84LK7.

Expressioni

Gene expression databases

GenevisibleiQ84LK7. OS.

Interactioni

Subunit structurei

Homodimer; disulfide-linked.By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os12g07700.1.

Structurei

Secondary structure

1226
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi73 – 75Combined sources3
Helixi79 – 84Combined sources6
Turni85 – 87Combined sources3
Helixi88 – 91Combined sources4
Turni92 – 95Combined sources4
Beta strandi98 – 103Combined sources6
Beta strandi105 – 112Combined sources8
Beta strandi116 – 119Combined sources4
Helixi122 – 135Combined sources14
Beta strandi143 – 145Combined sources3
Beta strandi147 – 149Combined sources3
Helixi158 – 165Combined sources8
Turni166 – 168Combined sources3
Helixi169 – 172Combined sources4
Turni173 – 176Combined sources4
Beta strandi184 – 186Combined sources3
Beta strandi189 – 192Combined sources4
Beta strandi196 – 203Combined sources8
Helixi204 – 215Combined sources12
Beta strandi220 – 224Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TH5NMR-A154-226[»]
2JNVNMR-A73-153[»]
ProteinModelPortaliQ84LK7.
SMRiQ84LK7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ84LK7.

Family & Domainsi

Sequence similaritiesi

Belongs to the NifU family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG2358. Eukaryota.
COG0694. LUCA.
HOGENOMiHOG000006174.
InParanoidiQ84LK7.
OMAiVAAPNHQ.
OrthoDBiEOG09360O3C.

Family and domain databases

InterProiIPR001075. NIF_FeS_clus_asmbl_NifU_C.
[Graphical view]
PfamiPF01106. NifU. 2 hits.
[Graphical view]
ProDomiPD002830. NIF_FeS_clus_asmbl_NifU_C. 2 hits.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q84LK7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQTTTVPMAA AAAVAPSTTT SSSASFKVAA YAWSSCRSSS SPATRLVAAP
60 70 80 90 100
NHQRPPLVVG AIAGLDPVTA VQLPLTAGNV ESVLDQVRPY LTADGGDVAL
110 120 130 140 150
HEIAGNVVRL KLQGACGSCP SSLITIKRGI ERRLMEKIPD VAAVEPVTDK
160 170 180 190 200
ETGLELNEEN VEKVLNEIRP YLAGTGGGGL QFLMIKGPIV KVRLTGPAAV
210 220
VRTVRIAVSK KLREKIPSIQ IVQLLS
Length:226
Mass (Da):23,653
Last modified:June 1, 2003 - v1
Checksum:iADD9AB2D2D540DD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB096013 mRNA. Translation: BAC76603.1.
DP000011 Genomic DNA. Translation: ABA96603.1.
AP008218 Genomic DNA. Translation: BAF29313.1.
AP014968 Genomic DNA. Translation: BAT16109.1.
RefSeqiXP_015619438.1. XM_015763952.1.
UniGeneiOs.5621.

Genome annotation databases

EnsemblPlantsiOS12T0176200-01; OS12T0176200-01; OS12G0176200.
GeneIDi4351651.
GrameneiOS12T0176200-01; OS12T0176200-01; OS12G0176200.
KEGGiosa:4351651.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB096013 mRNA. Translation: BAC76603.1.
DP000011 Genomic DNA. Translation: ABA96603.1.
AP008218 Genomic DNA. Translation: BAF29313.1.
AP014968 Genomic DNA. Translation: BAT16109.1.
RefSeqiXP_015619438.1. XM_015763952.1.
UniGeneiOs.5621.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TH5NMR-A154-226[»]
2JNVNMR-A73-153[»]
ProteinModelPortaliQ84LK7.
SMRiQ84LK7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os12g07700.1.

Proteomic databases

PaxDbiQ84LK7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS12T0176200-01; OS12T0176200-01; OS12G0176200.
GeneIDi4351651.
GrameneiOS12T0176200-01; OS12T0176200-01; OS12G0176200.
KEGGiosa:4351651.

Phylogenomic databases

eggNOGiKOG2358. Eukaryota.
COG0694. LUCA.
HOGENOMiHOG000006174.
InParanoidiQ84LK7.
OMAiVAAPNHQ.
OrthoDBiEOG09360O3C.

Miscellaneous databases

EvolutionaryTraceiQ84LK7.

Gene expression databases

GenevisibleiQ84LK7. OS.

Family and domain databases

InterProiIPR001075. NIF_FeS_clus_asmbl_NifU_C.
[Graphical view]
PfamiPF01106. NifU. 2 hits.
[Graphical view]
ProDomiPD002830. NIF_FeS_clus_asmbl_NifU_C. 2 hits.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiNIFU1_ORYSJ
AccessioniPrimary (citable) accession number: Q84LK7
Secondary accession number(s): Q0IPQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 25, 2006
Last sequence update: June 1, 2003
Last modified: November 30, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.