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Q84JI0

- P2C30_ORYSJ

UniProt

Q84JI0 - P2C30_ORYSJ

Protein

Probable protein phosphatase 2C 30

Gene

Os03g0268600

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 85 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    [a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi111 – 1111Manganese 1By similarity
    Metal bindingi111 – 1111Manganese 2By similarity
    Metal bindingi112 – 1121Manganese 1; via carbonyl oxygenBy similarity
    Metal bindingi298 – 2981Manganese 2By similarity
    Metal bindingi390 – 3901Manganese 2By similarity

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. protein serine/threonine phosphatase activity Source: EnsemblPlants/Gramene

    GO - Biological processi

    1. chloroplast organization Source: EnsemblPlants/Gramene
    2. leaf senescence Source: EnsemblPlants/Gramene
    3. negative regulation of abscisic acid-activated signaling pathway Source: EnsemblPlants/Gramene
    4. negative regulation of anion channel activity Source: EnsemblPlants/Gramene
    5. negative regulation of seed dormancy process Source: EnsemblPlants/Gramene
    6. positive regulation of gibberellic acid mediated signaling pathway Source: EnsemblPlants/Gramene
    7. positive regulation of seed germination Source: EnsemblPlants/Gramene
    8. protein dephosphorylation Source: InterPro
    9. regulation of stomatal movement Source: EnsemblPlants/Gramene
    10. release of seed from dormancy Source: EnsemblPlants/Gramene
    11. response to abscisic acid Source: EnsemblPlants/Gramene
    12. response to cold Source: EnsemblPlants/Gramene
    13. response to water deprivation Source: EnsemblPlants/Gramene
    14. stomatal movement Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Hydrolase, Protein phosphatase

    Keywords - Ligandi

    Magnesium, Manganese, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable protein phosphatase 2C 30 (EC:3.1.3.16)
    Short name:
    OsPP2C30
    Gene namesi
    Ordered Locus Names:Os03g0268600, LOC_Os03g16170
    ORF Names:OJA1364E02.13, OsJ_009875, OSJNBa0071M09.4
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 3

    Organism-specific databases

    GrameneiQ84JI0.

    Subcellular locationi

    GO - Cellular componenti

    1. cis-Golgi network membrane Source: EnsemblPlants/Gramene
    2. cytosol Source: EnsemblPlants/Gramene
    3. Golgi apparatus Source: EnsemblPlants/Gramene
    4. nucleus Source: EnsemblPlants/Gramene

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 404404Probable protein phosphatase 2C 30PRO_0000363276Add
    BLAST

    Proteomic databases

    PRIDEiQ84JI0.

    Structurei

    3D structure databases

    ProteinModelPortaliQ84JI0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini76 – 392317PP2C-likeAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi26 – 8863Arg-richAdd
    BLAST

    Sequence similaritiesi

    Belongs to the PP2C family.Curated
    Contains 1 PP2C-like domain.Curated

    Phylogenomic databases

    eggNOGiCOG0631.
    KOiK14497.
    OMAiANCKCEM.

    Family and domain databases

    Gene3Di3.60.40.10. 2 hits.
    InterProiIPR001932. PP2C-like_dom.
    IPR000222. PP2C_Mn2_Asp60_BS.
    IPR015655. Protein_Pase_2C.
    [Graphical view]
    PANTHERiPTHR13832. PTHR13832. 1 hit.
    PfamiPF00481. PP2C. 1 hit.
    [Graphical view]
    SMARTiSM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view]
    SUPFAMiSSF81606. SSF81606. 2 hits.
    PROSITEiPS01032. PP2C. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q84JI0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAEICCEVVA GSSSEGKGPE CDTGSRAARR RRMEIRRLRV VAERGAEEET    50
    SGKRRRLDGG GGEASTDEED REVERARYGF TSVCGRRRDM EDSVSACPGF 100
    LPGHHFFGVF DGHGCSHVAT SCGQRMHEIV VDEAGAAAGS AGLDEEARWR 150
    GVMERSFARM DAEAVASSRG SVAPAPTCRC EMQLPKCDHV GSTAVVAVLG 200
    PRHVVVANCG DSRAVLCRGG AAIPLSCDHK PDRPDELERI HAAGGRVIFW 250
    DGARVFGMLA MSRAIGDSYL KPYVICDPEV RVMERKDGED EFLILASDGL 300
    WDVVSNEVAC NVVRACLRSS GRRERNRSSP TSNLSPRQSS SSGDEAPNDG 350
    APSAAAGSES DEESAAEEDK ACAEAAVLLT KLALARQTSD NVSVVVVNLR 400
    RRKL 404
    Length:404
    Mass (Da):43,282
    Last modified:June 1, 2003 - v1
    Checksum:iAE54FDF177D0B6BF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC139168 Genomic DNA. Translation: AAP06902.1.
    AC135209 Genomic DNA. Translation: AAP06912.1.
    DP000009 Genomic DNA. Translation: ABF95181.1.
    AP008209 Genomic DNA. Translation: BAF11588.1.
    CM000140 Genomic DNA. Translation: EAZ26392.1.
    AK069274 mRNA. Translation: BAG91354.1.
    RefSeqiNP_001049674.1. NM_001056209.1.
    UniGeneiOs.35013.

    Genome annotation databases

    EnsemblPlantsiOS03T0268600-01; OS03T0268600-01; OS03G0268600.
    GeneIDi4332374.
    KEGGiosa:4332374.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC139168 Genomic DNA. Translation: AAP06902.1 .
    AC135209 Genomic DNA. Translation: AAP06912.1 .
    DP000009 Genomic DNA. Translation: ABF95181.1 .
    AP008209 Genomic DNA. Translation: BAF11588.1 .
    CM000140 Genomic DNA. Translation: EAZ26392.1 .
    AK069274 mRNA. Translation: BAG91354.1 .
    RefSeqi NP_001049674.1. NM_001056209.1.
    UniGenei Os.35013.

    3D structure databases

    ProteinModelPortali Q84JI0.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q84JI0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS03T0268600-01 ; OS03T0268600-01 ; OS03G0268600 .
    GeneIDi 4332374.
    KEGGi osa:4332374.

    Organism-specific databases

    Gramenei Q84JI0.

    Phylogenomic databases

    eggNOGi COG0631.
    KOi K14497.
    OMAi ANCKCEM.

    Family and domain databases

    Gene3Di 3.60.40.10. 2 hits.
    InterProi IPR001932. PP2C-like_dom.
    IPR000222. PP2C_Mn2_Asp60_BS.
    IPR015655. Protein_Pase_2C.
    [Graphical view ]
    PANTHERi PTHR13832. PTHR13832. 1 hit.
    Pfami PF00481. PP2C. 1 hit.
    [Graphical view ]
    SMARTi SM00331. PP2C_SIG. 1 hit.
    SM00332. PP2Cc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81606. SSF81606. 2 hits.
    PROSITEi PS01032. PP2C. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
      The rice chromosome 3 sequencing consortium
      Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
      , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
      Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    6. "Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
      Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
      BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiP2C30_ORYSJ
    AccessioniPrimary (citable) accession number: Q84JI0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 10, 2009
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3