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Protein

Pentatricopeptide repeat-containing protein At2g17670

Gene

At2g17670

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At2g17670
Gene namesi
Ordered Locus Names:At2g17670
ORF Names:T17A5.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G17670.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 463463Pentatricopeptide repeat-containing protein At2g17670PRO_0000356020Add
BLAST

Proteomic databases

PaxDbiQ84J71.
PRIDEiQ84J71.

Expressioni

Gene expression databases

ExpressionAtlasiQ84J71. baseline and differential.
GenevisibleiQ84J71. AT.

Interactioni

Protein-protein interaction databases

BioGridi1631. 7 interactions.
IntActiQ84J71. 7 interactions.
STRINGi3702.AT2G17670.1.

Structurei

3D structure databases

ProteinModelPortaliQ84J71.
SMRiQ84J71. Positions 65-463.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati121 – 15737PPR 1Add
BLAST
Repeati158 – 19235PPR 2Add
BLAST
Repeati193 – 22331PPR 3Add
BLAST
Repeati229 – 26335PPR 4Add
BLAST
Repeati264 – 29835PPR 5Add
BLAST
Repeati299 – 33335PPR 6Add
BLAST
Repeati334 – 36835PPR 7Add
BLAST
Repeati369 – 40335PPR 8Add
BLAST
Repeati404 – 43835PPR 9Add
BLAST

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated
Contains 9 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000238741.
InParanoidiQ84J71.
OMAiVCNSKNL.
PhylomeDBiQ84J71.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR033443. PPR_long.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 1 hit.
PF13041. PPR_2. 1 hit.
PF17177. PPR_long. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.

Isoform 1 (identifier: Q84J71-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA
60 70 80 90 100
PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
110 120 130 140 150
VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM
160 170 180 190 200
VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
210 220 230 240 250
LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM
260 270 280 290 300
YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
310 320 330 340 350
ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE
360 370 380 390 400
SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
410 420 430 440 450
VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL
460
KWLKKAKEQG LVP
Length:463
Mass (Da):51,408
Last modified:June 1, 2003 - v1
Checksum:iE6EEB31E87BD45E3
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti11 – 111M → I in AAM62704 (Ref. 4) Curated
Sequence conflicti46 – 461Q → H in AAM62704 (Ref. 4) Curated
Sequence conflicti96 – 961G → A in AAM62704 (Ref. 4) Curated
Sequence conflicti102 – 1021N → D in AAM62704 (Ref. 4) Curated
Sequence conflicti107 – 1071L → F in AAM62704 (Ref. 4) Curated
Sequence conflicti112 – 1121L → M in AAM62704 (Ref. 4) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002685 Genomic DNA. Translation: AEC06664.1.
BT004095 mRNA. Translation: AAO42121.1.
BT005703 mRNA. Translation: AAO64123.1.
AY085478 mRNA. Translation: AAM62704.1.
PIRiA84555.
T08865.
RefSeqiNP_565422.1. NM_127321.2. [Q84J71-1]
UniGeneiAt.27997.

Genome annotation databases

EnsemblPlantsiAT2G17670.1; AT2G17670.1; AT2G17670. [Q84J71-1]
GeneIDi816274.
KEGGiath:AT2G17670.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002685 Genomic DNA. Translation: AEC06664.1.
BT004095 mRNA. Translation: AAO42121.1.
BT005703 mRNA. Translation: AAO64123.1.
AY085478 mRNA. Translation: AAM62704.1.
PIRiA84555.
T08865.
RefSeqiNP_565422.1. NM_127321.2. [Q84J71-1]
UniGeneiAt.27997.

3D structure databases

ProteinModelPortaliQ84J71.
SMRiQ84J71. Positions 65-463.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi1631. 7 interactions.
IntActiQ84J71. 7 interactions.
STRINGi3702.AT2G17670.1.

Proteomic databases

PaxDbiQ84J71.
PRIDEiQ84J71.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G17670.1; AT2G17670.1; AT2G17670. [Q84J71-1]
GeneIDi816274.
KEGGiath:AT2G17670.

Organism-specific databases

TAIRiAT2G17670.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000238741.
InParanoidiQ84J71.
OMAiVCNSKNL.
PhylomeDBiQ84J71.

Miscellaneous databases

PROiQ84J71.

Gene expression databases

ExpressionAtlasiQ84J71. baseline and differential.
GenevisibleiQ84J71. AT.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR033443. PPR_long.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 1 hit.
PF13041. PPR_2. 1 hit.
PF17177. PPR_long. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 7 hits.
PROSITEiPS51375. PPR. 10 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis."
    Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I.
    Plant Cell 16:2089-2103(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY.

Entry informationi

Entry nameiPP161_ARATH
AccessioniPrimary (citable) accession number: Q84J71
Secondary accession number(s): Q8LED8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: June 1, 2003
Last modified: May 11, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.