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Protein

Gag polyprotein

Gene

gag

Organism
Puma lentivirus 14
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Host-virus interaction, Viral budding, Viral budding via the host ESCRT complexesSAAS annotation, Virus exit from host cell

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
Gene namesi
Name:gagImported
OrganismiPuma lentivirus 14Imported
Taxonomic identifieri32615 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusFeline lentivirus group

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinSAAS annotation, Virion

Structurei

3D structure databases

ProteinModelPortaliQ84808.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini401 – 416CCHC-typeInterPro annotationAdd BLAST16
Domaini419 – 433CCHC-typeInterPro annotationAdd BLAST15

Keywords - Domaini

RepeatSAAS annotation, Zinc-fingerSAAS annotation

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR000721. Gag_p24.
IPR012344. Matrix_HIV/RSV.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 2 hits.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q84808-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNNQGKELK AALRRACNVT VGEGKRSKRY TEGNLMWAIK FGNACTGRDP
60 70 80 90 100
ADVPETLVEI RNFIHELQDK LQKFGGSKEL ENCIKTLKVL TVAGVLKLPC
110 120 130 140 150
QNTESAIKLY ETMGLLGPAT DKKIEENLEE KPAEAYPVQV ANGVHQHVSF
160 170 180 190 200
NPRTAAIWME KARGGLGSEE AVLWFTAFSA DLTATDMASL ITAAPGCAAD
210 220 230 240 250
KKIIDDKLKE LTAKYAQDHP DGPRPLPYFT AEEIMGIGIP QNVQSQPQYG
260 270 280 290 300
PARAQARLWF LEALGHLQKI KAGEPKAVTL RQGPKESYKD FIDRLFQQID
310 320 330 340 350
QEQASDEVRD YLKQSLSISN ANGECRKAMT HLRPESTLEE KLRACQDIGS
360 370 380 390 400
TQYKMQMLAE AFNQMQVNQV QRGGFRGGRG GNRGRGGRGR GRGRGLGPLN
410 420 430 440 450
CFNCGKPGHL ASQCRQPIKC YKCGGSGHLA IDCLGGNDSK NGQNRGTAAP
460 470
RQFQVQQNNT LYPSLKEMQT EPTAPPMEI
Length:479
Mass (Da):52,647
Last modified:November 1, 1996 - v1
Checksum:i21C4190013B21242
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U03982 Genomic DNA. Translation: AAA67167.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U03982 Genomic DNA. Translation: AAA67167.1.

3D structure databases

ProteinModelPortaliQ84808.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR000721. Gag_p24.
IPR012344. Matrix_HIV/RSV.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 2 hits.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ84808_9RETR
AccessioniPrimary (citable) accession number: Q84808
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.