Capsid proteins P88 - Foot-and-mouth disease virus (strain O1) (Aphthovirus O)

Preferred order of sections

Names and origin

Protein names	Submitted name: Capsid proteins P88 EMBL CAA25417.1
Organism	Foot-and-mouth disease virus (strain O1) (Aphthovirus O) (FMDV) [Complete proteome]
Taxonomic identifier	73482 [NCBI]
Taxonomic lineage	Viruses › ssRNA viruses › ssRNA positive-strand viruses, no DNA stage › Picornavirales › Picornaviridae › Aphthovirus › Foot-and-mouth disease virus › Foot-and-mouth disease virus - type O
Virus host	Bos taurus (Bovine) [TaxID: 9913] Capra hircus (Goat) [TaxID: 9925] Cervidae (deer) [TaxID: 9850] Erinaceidae (hedgehogs) [TaxID: 9363] Loxodonta africana (African elephant) [TaxID: 9785] Ovis aries (Sheep) [TaxID: 9940] Rattus norvegicus (Rat) [TaxID: 10116] Sus scrofa (Pig) [TaxID: 9823]

Protein attributes

Sequence length	720 AA.
Sequence status	Fragment.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 1FOD PDB 1BBT Complete proteome
Gene Ontology (GO)
Cellular_component	icosahedral viral capsid Inferred from electronic annotation. Source: InterPro
Molecular_function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

‹1 – 69

›69

Potential EMBL CAA25417.1

PRO_5000145451

Chain

70 – 287

218

Potential EMBL CAA25417.1

PRO_5000145452

Chain

288 – 507

220

Potential EMBL CAA25417.1

PRO_5000145453

Chain

508 – ›720

›213

Potential EMBL CAA25417.1

PRO_5000145454

Experimental info

Non-terminal residue

Non-terminal residue

1

Sequences

Sequence

Length

Mass (Da)

Tools

Q84771 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 560453A47D25FF35
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FASTA

720

79,294

        10         20         30         40         50         60 
NTGSIINNYY MQQYQNSMDT QLGDNAISGG SNEGSTDTTS THTTNTQNND WFSKLASSAF 

        70         80         90        100        110        120 
SGLFGALLAD KKTEETTLLE DRILTTRNGH TTSTTQSSVG VTYGYATAED FVSGPNTSGL 

       130        140        150        160        170        180 
ETRVVQAERF FKTHLFDWVT SDSFGRCHLL ELPTDHKGVY GSLTDSYAYM RNGWDVEVTA 

       190        200        210        220        230        240 
VGNQFNGGCL LVAMVPELYS IQKRELYQLT LFPHQFINPR TNMTAHITVP FVGVNRYDQY 

       250        260        270        280        290        300 
KVHKPWTLVV MVVAPLTVNT EGAPQIKVYA NIAPTNVHVA GEFPSKEGIF PVACSDGYGG 

       310        320        330        340        350        360 
LVTTDPKTAD PVYGKVFNPP RNQLPGRFTN LLDVAEACPT FLRFEGGVPY VTTKTDSDRV 

       370        380        390        400        410        420 
LAQFDMSLAA KQMSNTFLAG LAQYYTQYSG TINLHFMFTG PTDAKARYMV AYAPPGMEPP 

       430        440        450        460        470        480 
KTPEAAAHCI HAEWDTGLNS KFTFSIPYLS AADYAYTASG VAETTNVQGW VCLFQITHGK 

       490        500        510        520        530        540 
ADGDALVVLA SAGKDFELRL PVDARAETTS AGESADPVTT TVENYGGETQ IQRRQHTDVS 

       550        560        570        580        590        600 
FIMDRFVKVT PQNQINILDL MQIPSHTLVG ALLRASTYYF SDLEIAVKHE GDLTWVPNGA 

       610        620        630        640        650        660 
PEKALDNTTN PTAYHKAPLT RLALPYTAPH RVLATVYNGE CRYNRNAVPN LRGDLQVLAQ 

       670        680        690        700        710        720 
KVARTLPTSF NYGAIKATRV TELLYRMKRA ETYCPRPLLA IHPTEARHKQ KIVAPVKQTL

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References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Nucleotide sequence and genome organization of foot-and-mouth disease virus." Forss S., Strebel K., Beck E., Schaller H. Nucleic Acids Res. 12:6587-6601(1984) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: O1.
[2]	"Methods used in the structure determination of foot-and-mouth disease virus." Fry E., Acharya R., Stuart D. Acta Crystallogr. A 49 ( Pt 1):45-55(1993) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 508-720; 70-287 AND 288-507.
[3]	"Structure of a major immunogenic site on foot-and-mouth disease virus." Logan D., Abu-Ghazaleh R., Blakemore W., Curry S., Jackson T., King A., Lea S., Lewis R., Newman J., Parry N. Nature 362:566-568(1993) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 508-720; 70-287 AND 288-507.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

X00871 Genomic RNA. Translation: CAA25417.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1BBT	X-ray	2.60	1	508-720	[»]
			2	70-287	[»]
			3	288-507	[»]
1FOD	X-ray	2.60	1	508-720	[»]
			2	70-287	[»]
			3	288-507	[»]

ProteinModelPortal

Q84771.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

Gene3D

4.10.90.10. 1 hit.

InterPro

IPR015031. Capsid_VP4_Picornavir.
IPR004080. FMDV_VP1_coat.
IPR001676. Picornavirus_capsid.
[Graphical view]

Pfam

PF00073. Rhv. 3 hits.
PF08935. VP4_2. 1 hit.
[Graphical view]

PRINTS

PR01542. FMDVP1COAT.

ProtoNet

Search...

Other

EvolutionaryTrace

Q84771.

Entry information

Entry name

Q84771_FMDVO

Accession

Primary (citable) accession number: Q84771

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	April 3, 2013
This is version 58 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)