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Q84771

- Q84771_FMDVO

UniProt

Q84771 - Q84771_FMDVO

Protein
Submitted name:

Capsid proteins P88

Gene
N/A
Organism
Foot-and-mouth disease virus (isolate Bovine/Germany/O1Kaufbeuren/1966 serotype O) (FMDV)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 67 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Capsid proteins P88Imported
    OrganismiFoot-and-mouth disease virus (isolate Bovine/Germany/O1Kaufbeuren/1966 serotype O) (FMDV)Imported
    Taxonomic identifieri73482 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stagePicornaviralesPicornaviridaeAphthovirus
    Virus hostiBos taurus (Bovine) [TaxID: 9913]
    Capra hircus (Goat) [TaxID: 9925]
    Cervidae (deer) [TaxID: 9850]
    Erinaceidae (hedgehogs) [TaxID: 9363]
    Loxodonta africana (African elephant) [TaxID: 9785]
    Ovis aries (Sheep) [TaxID: 9940]
    Rattus norvegicus (Rat) [TaxID: 10116]
    Sus scrofa (Pig) [TaxID: 9823]
    ProteomesiUP000008765: Genome

    Subcellular locationi

    GO - Cellular componenti

    1. icosahedral viral capsid Source: InterPro

    Keywords - Cellular componenti

    Capsid proteinSAAS annotation, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini‹1 – 69›69 PotentialImportedPRO_5000145451Add
    BLAST
    Chaini70 – 287218 PotentialImportedPRO_5000145452Add
    BLAST
    Chaini288 – 507220 PotentialImportedPRO_5000145453Add
    BLAST
    Chaini508 – ›720›213 PotentialImportedPRO_5000145454Add
    BLAST

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1BBTX-ray2.601508-720[»]
    270-287[»]
    3288-507[»]
    1FODX-ray2.601508-720[»]
    270-287[»]
    3288-507[»]
    1QQPX-ray1.901508-720[»]
    270-287[»]
    3288-507[»]
    ProteinModelPortaliQ84771.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ84771.

    Family & Domainsi

    Family and domain databases

    Gene3Di2.60.120.20. 3 hits.
    4.10.90.10. 1 hit.
    InterProiIPR015031. Capsid_VP4_Picornavir.
    IPR004080. FMDV_VP1_coat.
    IPR001676. Picornavirus_capsid.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00073. Rhv. 3 hits.
    PF08935. VP4_2. 1 hit.
    [Graphical view]
    PRINTSiPR01542. FMDVP1COAT.

    Sequencei

    Sequence statusi: Fragment.

    Q84771-1 [UniParc]FASTAAdd to Basket

    « Hide

    NTGSIINNYY MQQYQNSMDT QLGDNAISGG SNEGSTDTTS THTTNTQNND    50
    WFSKLASSAF SGLFGALLAD KKTEETTLLE DRILTTRNGH TTSTTQSSVG 100
    VTYGYATAED FVSGPNTSGL ETRVVQAERF FKTHLFDWVT SDSFGRCHLL 150
    ELPTDHKGVY GSLTDSYAYM RNGWDVEVTA VGNQFNGGCL LVAMVPELYS 200
    IQKRELYQLT LFPHQFINPR TNMTAHITVP FVGVNRYDQY KVHKPWTLVV 250
    MVVAPLTVNT EGAPQIKVYA NIAPTNVHVA GEFPSKEGIF PVACSDGYGG 300
    LVTTDPKTAD PVYGKVFNPP RNQLPGRFTN LLDVAEACPT FLRFEGGVPY 350
    VTTKTDSDRV LAQFDMSLAA KQMSNTFLAG LAQYYTQYSG TINLHFMFTG 400
    PTDAKARYMV AYAPPGMEPP KTPEAAAHCI HAEWDTGLNS KFTFSIPYLS 450
    AADYAYTASG VAETTNVQGW VCLFQITHGK ADGDALVVLA SAGKDFELRL 500
    PVDARAETTS AGESADPVTT TVENYGGETQ IQRRQHTDVS FIMDRFVKVT 550
    PQNQINILDL MQIPSHTLVG ALLRASTYYF SDLEIAVKHE GDLTWVPNGA 600
    PEKALDNTTN PTAYHKAPLT RLALPYTAPH RVLATVYNGE CRYNRNAVPN 650
    LRGDLQVLAQ KVARTLPTSF NYGAIKATRV TELLYRMKRA ETYCPRPLLA 700
    IHPTEARHKQ KIVAPVKQTL 720
    Length:720
    Mass (Da):79,294
    Last modified:November 1, 1996 - v1
    Checksum:i560453A47D25FF35
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported
    Non-terminal residuei720 – 7201Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X00871 Genomic RNA. Translation: CAA25417.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X00871 Genomic RNA. Translation: CAA25417.1 .

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1BBT X-ray 2.60 1 508-720 [» ]
    2 70-287 [» ]
    3 288-507 [» ]
    1FOD X-ray 2.60 1 508-720 [» ]
    2 70-287 [» ]
    3 288-507 [» ]
    1QQP X-ray 1.90 1 508-720 [» ]
    2 70-287 [» ]
    3 288-507 [» ]
    ProteinModelPortali Q84771.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Miscellaneous databases

    EvolutionaryTracei Q84771.

    Family and domain databases

    Gene3Di 2.60.120.20. 3 hits.
    4.10.90.10. 1 hit.
    InterProi IPR015031. Capsid_VP4_Picornavir.
    IPR004080. FMDV_VP1_coat.
    IPR001676. Picornavirus_capsid.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00073. Rhv. 3 hits.
    PF08935. VP4_2. 1 hit.
    [Graphical view ]
    PRINTSi PR01542. FMDVP1COAT.
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequence and genome organization of foot-and-mouth disease virus."
      Forss S., Strebel K., Beck E., Schaller H.
      Nucleic Acids Res. 12:6587-6601(1984) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Isolate Bovine/Germany/O1Kaufbeuren/1966 serotype OImported.
    2. "Methods used in the structure determination of foot-and-mouth disease virus."
      Fry E., Acharya R., Stuart D.
      Acta Crystallogr. A 49 ( Pt 1):45-55(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 508-720; 70-287 AND 288-507.
    3. "Structure of a major immunogenic site on foot-and-mouth disease virus."
      Logan D., Abu-Ghazaleh R., Blakemore W., Curry S., Jackson T., King A., Lea S., Lewis R., Newman J., Parry N.
      Nature 362:566-568(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 508-720; 70-287 AND 288-507.
    4. "The structure and function of a foot-and-mouth disease virus-oligosaccharide receptor complex."
      Fry E.E., Lea S.M., Jackson T., Newman J.W., Ellard F.M., Blakemore W.E., Abu-Ghazaleh R., Samuel A., King A.M., Stuart D.I.
      EMBO J. 18:543-554(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 508-720; 70-287 AND 288-507.

    Entry informationi

    Entry nameiQ84771_FMDVO
    AccessioniPrimary (citable) accession number: Q84771
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 1, 1996
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 67 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteomeImported

    External Data

    Dasty 3