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Protein
Submitted name:

L-aspartate-beta-decarboxylase

Gene

aspD

Organism
Pseudomonas dacunhae ATCC 21192
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseUniRule annotation, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BRENDAi4.1.1.12. 5113.

Names & Taxonomyi

Protein namesi
Submitted name:
L-aspartate-beta-decarboxylaseImported
Gene namesi
Name:aspDImported
OrganismiPseudomonas dacunhae ATCC 21192Imported
Taxonomic identifieri207291 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeComamonas

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei315 – 3151N6-(pyridoxal phosphate)lysineCombined sources

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3FDDX-ray2.35A1-533[»]
ProteinModelPortaliQ845W8.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ845W8.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini174 – 508335Aminotran_1_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR022518. Aspartate_4-decarboxylase.
IPR004838. NHTrfase_class1_PyrdxlP-BS.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 2 hits.
TIGRFAMsiTIGR03801. asp_4_decarbox. 1 hit.
PROSITEiPS00105. AA_TRANSFER_CLASS_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q845W8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKDYQSLAN LSPFELKDEL IKIASGDGNR LMLNAGRGNP NFLATTPRRA
60 70 80 90 100
FFRLGLFAAA ESELSYSYMN TVGVGGLAKI EGIEGRFERY IAENRDQEGV
110 120 130 140 150
RFLGKSLSYV RDQLGLDPAA FLHEMVDGIL GCNYPVPPRM LNISEKIVRQ
160 170 180 190 200
YIIREMGADA IPSESVNLFA VEGGTAAMAY IFESMKVNGL LKAGDKVAIG
210 220 230 240 250
MPVFTPYIEI PELAQYALEE VAINADPALN WQYPDSELDK LKDPAIKIFF
260 270 280 290 300
CVNPSNPPSV KMDERSLERV RKIVAEHRPD LMILTDDVYG TFADGFQSLF
310 320 330 340 350
AICPANTLLV YSFSKYFGAT GWRLGVVAAH KENIFDLALG RLPESEKTAL
360 370 380 390 400
DDRYRSLLPD VRSLKFLDRL VADSRAVALN HTAGLSTPQQ VQMTLFSLFA
410 420 430 440 450
LMDESDQYKH TLKQLIRRRE ATLYRELGTP PQRDENAVDY YTLIDLQDVT
460 470 480 490 500
SKLYGEAFSK WAVKQSSTGD MLFRIADETG IVLLPGRGFG SDRPSGRASL
510 520 530
ANLNEYEYAA IGRALRQMAD ELYAQYTQQG NKR
Length:533
Mass (Da):59,517
Last modified:June 1, 2003 - v1
Checksum:iBF3DA1A91006B113
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB091385 Genomic DNA. Translation: BAC65229.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB091385 Genomic DNA. Translation: BAC65229.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3FDDX-ray2.35A1-533[»]
ProteinModelPortaliQ845W8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

BRENDAi4.1.1.12. 5113.

Miscellaneous databases

EvolutionaryTraceiQ845W8.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR022518. Aspartate_4-decarboxylase.
IPR004838. NHTrfase_class1_PyrdxlP-BS.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 2 hits.
TIGRFAMsiTIGR03801. asp_4_decarbox. 1 hit.
PROSITEiPS00105. AA_TRANSFER_CLASS_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Membrane topology of aspartate:alanine antiporter AspT from Comamonas testosteroni."
    Fujiki T., Nanatani K., Nishitani K., Yagi K., Ohnishi F., Yoneyama H., Uchida T., Nakajima T., Abe K.
    J. Biochem. 141:85-91(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 21192Imported.
  2. "The crystal structure of the Pseudomonas dacunhae aspartate-beta-decarboxylase dodecamer reveals an unknown oligomeric assembly for a pyridoxal-5'-phosphate-dependent enzyme."
    Lima S., Sundararaju B., Huang C., Khristoforov R., Momany C., Phillips R.S.
    J. Mol. Biol. 388:98-108(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.35 ANGSTROMS), PYRIDOXAL PHOSPHATE AT LYS-315.

Entry informationi

Entry nameiQ845W8_COMTE
AccessioniPrimary (citable) accession number: Q845W8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 16, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.