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Protein
Submitted name:

Arginine/Ornithine decarboxylase

Gene

A207R

Organism
Paramecium bursaria Chlorella virus 1 (PBCV-1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

SABIO-RKQ84527.

Names & Taxonomyi

Protein namesi
Submitted name:
Arginine/Ornithine decarboxylaseImported
Gene namesi
Name:A207RImported
OrganismiParamecium bursaria Chlorella virus 1 (PBCV-1)Imported
Taxonomic identifieri10506 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stagePhycodnaviridaeChlorovirus
Virus hostiChlorella [TaxID: 114049]
Proteomesi
  • UP000000862 Componenti: Genome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2NV9X-ray1.95A/B/C/D/E/F/G/H1-372[»]
2NVAX-ray1.80A/B/C/D/E/F/G/H1-372[»]
ProteinModelPortaliQ84527.
SMRiQ84527. Positions 1-372.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ84527.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 259234Orn_Arg_deC_NInterPro annotationAdd
BLAST
Domaini264 – 371108Orn_DAP_Arg_deCInterPro annotationAdd
BLAST

Phylogenomic databases

KOiK01581.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
InterProiIPR009006. Ala_racemase/Decarboxylase_C.
IPR022643. De-COase2_C.
IPR022644. De-COase2_N.
IPR000183. Orn/DAP/Arg_de-COase.
IPR002433. Orn_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PRINTSiPR01179. ODADCRBXLASE.
PR01182. ORNDCRBXLASE.
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.

Sequencei

Sequence statusi: Complete.

Q84527-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSVVNNILK AHPHQTKSFY VSSPKIVEDL IDQWTILFPR VTPHYAVKCN
60 70 80 90 100
NDEVLLKTMC DKNVNFDCAS SSEIKKVIQI GVSPSRIIFA HTMKTIDDLI
110 120 130 140 150
FAKDQGVDIA TFDSSFELDK IHTYHPNCKM ILRIRCDDPN ATVQLGNKFG
160 170 180 190 200
ANEDEIRHLL EYAKQLDIEV IGISFHVGSG SRNPEAYYRA IKSSKEAFNE
210 220 230 240 250
AISVGHKPYI LDIGGGLHAD IDEGELSTYM SDYINDAIKD FFPEDTVTIV
260 270 280 290 300
AEPGRFFAEH YSVLATQVIG KRVRDGLYEY FFNESTYGGF SNVIFEKSVP
310 320 330 340 350
TPQLLRDVPD DEEYVPSVLY GCTCDGVDVI NHNVALPELH IGDWVYFPSW
360 370
GAYTNVLTTS FNGFGEYDVY YI
Length:372
Mass (Da):41,969
Last modified:November 1, 1996 - v1
Checksum:i3CE0ED02394297E2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JF411744 Genomic DNA. Translation: AAC96575.1.
PIRiT17697.
RefSeqiNP_048554.1. NC_000852.5.

Genome annotation databases

GeneIDi917923.
KEGGivg:917923.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JF411744 Genomic DNA. Translation: AAC96575.1.
PIRiT17697.
RefSeqiNP_048554.1. NC_000852.5.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2NV9X-ray1.95A/B/C/D/E/F/G/H1-372[»]
2NVAX-ray1.80A/B/C/D/E/F/G/H1-372[»]
ProteinModelPortaliQ84527.
SMRiQ84527. Positions 1-372.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi917923.
KEGGivg:917923.

Phylogenomic databases

KOiK01581.

Enzyme and pathway databases

SABIO-RKQ84527.

Miscellaneous databases

EvolutionaryTraceiQ84527.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
InterProiIPR009006. Ala_racemase/Decarboxylase_C.
IPR022643. De-COase2_C.
IPR022644. De-COase2_N.
IPR000183. Orn/DAP/Arg_de-COase.
IPR002433. Orn_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PRINTSiPR01179. ODADCRBXLASE.
PR01182. ORNDCRBXLASE.
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of 45 kb of DNA located at the left end of the chlorella virus PBCV-1 genome."
    Lu Z., Li Y., Zhang Y., Kutish G.F., Rock D.L., Van Etten J.L.
    Virology 206:339-352(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "Analysis of 43 kb of the Chlorella virus PBCV-1 330-kb genome: map positions 45 to 88."
    Li Y., Lu Z., Burbank D.E., Kutish G.F., Rock D.L., Van Etten J.L.
    Virology 212:134-150(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "Analysis of 94 kb of the chlorella virus PBCV-1 330-kb genome: map positions 88 to 182."
    Lu Z., Li Y., Que Q., Kutish G.F., Rock D.L., Van Etten J.L.
    Virology 216:102-123(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "Analysis of 76 kb of the chlorella virus PBCV-1 330-kb genome: map positions 182 to 258."
    Kutish G.F., Li Y., Lu Z., Furuta M., Rock D.L., Van Etten J.L.
    Virology 223:303-317(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "Analysis of 74 kb of DNA located at the right end of the 330-kb chlorella virus PBCV-1 genome."
    Li Y., Lu Z., Sun L., Ropp S., Kutish G.F., Rock D.L., Van Etten J.L.
    Virology 237:360-377(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  7. "Characterization of a beta-1,3-glucanase encoded by chlorella virus PBCV-1."
    Sun L., Gurnon J.R., Adams B.J., Graves M.V., Van Etten J.L.
    Virology 276:27-36(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  8. "X-ray structure of Paramecium bursaria Chlorella virus arginine decarboxylase: insight into the structural basis for substrate specificity."
    Shah R., Akella R., Goldsmith E.J., Phillips M.A.
    Biochemistry 46:2831-2841(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS).
  9. "Microarray analysis of Paramecium bursaria chlorella virus 1 transcription."
    Yanai-Balser G.M., Duncan G.A., Eudy J.D., Wang D., Li X., Agarkova I.V., Dunigan D.D., Van Etten J.L.
    J. Virol. 84:532-542(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiQ84527_PBCV1
AccessioniPrimary (citable) accession number: Q84527
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 17, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.