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Protein
Submitted name:

Putative oxidoreductase

Gene

yciK

Organism
Shigella flexneri
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei99 – 991NADP; via carbonyl oxygenCombined sources
Binding sitei165 – 1651NADPCombined sources
Binding sitei169 – 1691NADPCombined sources

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi21 – 244NADPCombined sources
Nucleotide bindingi44 – 452NADPCombined sources
Nucleotide bindingi70 – 712NADPCombined sources
Nucleotide bindingi194 – 1996NADPCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

NADPCombined sources, Nucleotide-bindingCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
Putative oxidoreductaseImported
Gene namesi
Name:yciKImported
Ordered Locus Names:S1358Imported, SF1273Imported
OrganismiShigella flexneriImported
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
Proteomesi
  • UP000002673 Componenti: Chromosome
  • UP000001006 Componenti: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3E9QX-ray1.70A/B1-252[»]
3F5SX-ray1.36A/B6-249[»]
3GY0X-ray1.55A6-249[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105UBK. Bacteria.
COG1028. LUCA.
KOiK00540.
OMAiDDIMQIN.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
IPR002347. SDR_fam.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 2 hits.
PfamiPF00106. adh_short. 1 hit.
[Graphical view]
PRINTSiPR00081. GDHRDH.
SUPFAMiSSF51735. SSF51735. 1 hit.
PROSITEiPS00061. ADH_SHORT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q83RM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHYQPKQDLL NDRIILVTGA SDGIGREAAM TYARYGATVI LLGRNEEKLR
60 70 80 90 100
QVASHINEET GRQPQWFILD LLTCTSENCQ QLAQRIVVNY PRLDGVLHNA
110 120 130 140 150
GLLGDVCPMS EQNPQVWQDV MQINVNATFM LTQALLPLLL KSDAGSLVFT
160 170 180 190 200
SSSVGRQGRA NWGAYAASKF ATEGMMQVLA DEYQQRLRVN CINPGGTRTA
210 220 230 240 250
MRASAFPTED PQKLKTPADI MPLYLWLMGD DSRRKTGMTF DAQPGRKPGI

SQ
Length:252
Mass (Da):27,975
Last modified:June 1, 2003 - v1
Checksum:i37AD8E0ACA037612
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42885.1.
AE014073 Genomic DNA. Translation: AAP16771.1.
RefSeqiNP_707178.1. NC_004337.2.
WP_000559292.1. NZ_LM651928.1.

Genome annotation databases

EnsemblBacteriaiAAN42885; AAN42885; SF1273.
AAP16771; AAP16771; S1358.
CDX06581; CDX06581; NCTC1_01345.
GeneIDi1024233.
KEGGisfl:SF1273.
sft:NCTC1_01345.
sfx:S1358.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42885.1.
AE014073 Genomic DNA. Translation: AAP16771.1.
RefSeqiNP_707178.1. NC_004337.2.
WP_000559292.1. NZ_LM651928.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3E9QX-ray1.70A/B1-252[»]
3F5SX-ray1.36A/B6-249[»]
3GY0X-ray1.55A6-249[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN42885; AAN42885; SF1273.
AAP16771; AAP16771; S1358.
CDX06581; CDX06581; NCTC1_01345.
GeneIDi1024233.
KEGGisfl:SF1273.
sft:NCTC1_01345.
sfx:S1358.

Phylogenomic databases

eggNOGiENOG4105UBK. Bacteria.
COG1028. LUCA.
KOiK00540.
OMAiDDIMQIN.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
IPR002347. SDR_fam.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 2 hits.
PfamiPF00106. adh_short. 1 hit.
[Graphical view]
PRINTSiPR00081. GDHRDH.
SUPFAMiSSF51735. SSF51735. 1 hit.
PROSITEiPS00061. ADH_SHORT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157."
    Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J., Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L., Xue Y.
    , Zhao A., Gao Y., Zhu J., Kan B., Ding K., Chen S., Cheng H., Yao Z., He B., Chen R., Ma D., Qiang B., Wen Y., Hou Y., Yu J.
    Nucleic Acids Res. 30:4432-4441(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 301Imported and 301 / Serotype 2aImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2457TImported and ATCC 700930 / 2457T / Serotype 2aImported.

Entry informationi

Entry nameiQ83RM3_SHIFL
AccessioniPrimary (citable) accession number: Q83RM3
Secondary accession number(s): Q7C1W5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 11, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.