Probable sor-operon regulator - Shigella flexneri

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Q83PA8 (Q83PA8_SHIFL) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 68. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Probable sor-operon regulator EMBL AAN45519.2

Gene names

Name:	sorC EMBL AAN45519.2
Ordered Locus Names:	S3636, SF4094

Organism

Shigella flexneri [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Shigella

Protein attributes

Sequence length	315 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3EFB Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro carbohydrate binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q83PA8 [UniParc].

Last modified July 5, 2005. Version 4.
Checksum: 5454A25735C16C8B
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315

34,977

        10         20         30         40         50         60 
MENSDDIRLI VKIAQLYYEQ DMTQAQIARE LGIYRTTISR LLKRGRDQGM VTIAINYDYN 

        70         80         90        100        110        120 
ENLWLEQQLK QKFGLKDVVV VSGNDEDEET QLAMMGLHGA QLLDRLLEPG DIVGFSWGRA 

       130        140        150        160        170        180 
VSALVENLPQ AGQSRQLICV PIIGGPSGKL ESRYHVNTLT YSAAAKLKGE SHLADFPALL 

       190        200        210        220        230        240 
DNPLIRNGIM QSQHFKTISA YWDNLDIALV GIGSPAIRDG ANWHAFYGGE ESDDLNARQV 

       250        260        270        280        290        300 
AGDICSRFFD IHGAMVETNM SEKTLSIEMN KLKQARYSIG IAMSEEKYSG IIGALRGKYI 

       310 
NCLVTNSSTA ELLLK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157." Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J., Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L., Xue Y. Yu J. Nucleic Acids Res. 30:4432-4441(2002) [PubMed: 12384590] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 301 / Serotype 2a.
[2]	"Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T." Wei J., Goldberg M.B., Burland V., Venkatesan M.M., Deng W., Fournier G., Mayhew G.F., Plunkett G. III, Rose D.J., Darling A., Mau B., Perna N.T., Payne S.M., Runyen-Janecky L.J., Zhou S., Schwartz D.C., Blattner F.R. Infect. Immun. 71:2775-2786(2003) [PubMed: 12704152] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700930 / 2457T / Serotype 2a.
[3]	"Crystal Structure of Probable sor Operon Regulator from Shigella flexneri." Kim Y., Evdokimova E., Kudritska M., Savchenko A., Edwards A., Anderson W.F., Joachimiak A. Submitted (SEP-2008) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 51-315.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE005674 Genomic DNA. Translation: AAN45519.2.
AE014073 Genomic DNA. Translation: AAP18680.1.

RefSeq

NP_709812.2. NC_004337.2.
NP_838869.1. NC_004741.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3EFB	X-ray	2.00	A/B/C/D	51-315	[»]

ProteinModelPortal

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

EBESCT00000088093; EBESCP00000084915; EBESCG00000087138.
EBESCT00000090795; EBESCP00000087431; EBESCG00000089839.

GeneID

1027602.
1079856.

GenomeReviews

Gene locus SF4094 in contig AE005674_GR.
Gene locus S3636 in contig AE014073_GR.

KEGG

sfl:SF4094.
sfx:S3636.

PATRIC

18709080. VBIShiFle31049_3978.

Organism-specific databases

CMR

Phylogenomic databases

GeneTree

EBGT00050000009016.

HOGENOM

ProtClustDB

Enzyme and pathway databases

BioCyc

SFLE198214:AAN45519.1-MONOMER.

Family and domain databases

InterPro

IPR009057. Homeodomain-like.
IPR007630. RNA_pol_sigma70_r4.
IPR007324. Sugar-bd_dom_put.
IPR011991. WHTH_trsnscrt_rep_DNA-bd.
[Graphical view]

Gene3D

G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.

Pfam

PF04545. Sigma70_r4. 1 hit.
PF04198. Sugar-bind. 1 hit.
[Graphical view]

SUPFAM

SSF46689. Homeodomain_like. 1 hit.

ProtoNet

Entry information

Entry name

Q83PA8_SHIFL

Accession

Primary (citable) accession number: Q83PA8
Secondary accession number(s): Q7UBA9

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	July 5, 2005
Last modified:	December 14, 2011
This is version 68 of the entry and version 4 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info