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Protein

UPF0145 protein YbjQ

Gene

ybjQ

Organism
Shigella flexneri
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0145 protein YbjQUniRule annotation
Gene namesi
Name:ybjQUniRule annotation
Ordered Locus Names:SF0821, S0862
OrganismiShigella flexneri
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeShigella
Proteomesi
  • UP000002673 Componenti: Chromosome
  • UP000001006 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002258461 – 107UPF0145 protein YbjQAdd BLAST107

Proteomic databases

PaxDbiQ83LS2.

Interactioni

Protein-protein interaction databases

STRINGi198214.SF0821.

Structurei

Secondary structure

1107
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 8Combined sources4
Beta strandi12 – 27Combined sources16
Helixi29 – 35Combined sources7
Turni36 – 38Combined sources3
Beta strandi41 – 44Combined sources4
Turni45 – 47Combined sources3
Helixi50 – 72Combined sources23
Beta strandi75 – 88Combined sources14
Beta strandi93 – 107Combined sources15

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y2IX-ray2.30A/B/C/D/E1-107[»]
ProteinModelPortaliQ83LS2.
SMRiQ83LS2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ83LS2.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0145 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K8R. Bacteria.
COG0393. LUCA.
HOGENOMiHOG000217614.
OMAiIREYRGI.

Family and domain databases

Gene3Di3.30.110.70. 1 hit.
HAMAPiMF_00338. UPF0145. 1 hit.
InterProiIPR002765. UPF0145.
[Graphical view]
PfamiPF01906. YbjQ_1. 1 hit.
[Graphical view]
SUPFAMiSSF117782. SSF117782. 1 hit.

Sequencei

Sequence statusi: Complete.

Q83LS2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQFSTTPTLE GLTIVEYCGV VTGEAILGAN IFRDFFAGIR DIVGGRSGAY
60 70 80 90 100
EKELRKAREI AFEELGSQAR ALGADAVVGI DIDYETVGQN GSMLMVSVSG

TAVKTRR
Length:107
Mass (Da):11,422
Last modified:June 1, 2003 - v1
Checksum:i9D20C4DCDDF0B435
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42454.1.
AE014073 Genomic DNA. Translation: AAP16327.1.
RefSeqiNP_706747.1. NC_004337.2.
WP_001160722.1. NZ_LVJC01000034.1.

Genome annotation databases

EnsemblBacteriaiAAN42454; AAN42454; SF0821.
AAP16327; AAP16327; S0862.
GeneIDi1023799.
KEGGisfl:SF0821.
sft:NCTC1_00821.
sfx:S0862.
PATRICi18702843. VBIShiFle31049_0931.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42454.1.
AE014073 Genomic DNA. Translation: AAP16327.1.
RefSeqiNP_706747.1. NC_004337.2.
WP_001160722.1. NZ_LVJC01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y2IX-ray2.30A/B/C/D/E1-107[»]
ProteinModelPortaliQ83LS2.
SMRiQ83LS2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198214.SF0821.

Proteomic databases

PaxDbiQ83LS2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN42454; AAN42454; SF0821.
AAP16327; AAP16327; S0862.
GeneIDi1023799.
KEGGisfl:SF0821.
sft:NCTC1_00821.
sfx:S0862.
PATRICi18702843. VBIShiFle31049_0931.

Phylogenomic databases

eggNOGiENOG4105K8R. Bacteria.
COG0393. LUCA.
HOGENOMiHOG000217614.
OMAiIREYRGI.

Miscellaneous databases

EvolutionaryTraceiQ83LS2.

Family and domain databases

Gene3Di3.30.110.70. 1 hit.
HAMAPiMF_00338. UPF0145. 1 hit.
InterProiIPR002765. UPF0145.
[Graphical view]
PfamiPF01906. YbjQ_1. 1 hit.
[Graphical view]
SUPFAMiSSF117782. SSF117782. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBJQ_SHIFL
AccessioniPrimary (citable) accession number: Q83LS2
Secondary accession number(s): Q7C2D3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.