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Protein

UPF0145 protein YbjQ

Gene

ybjQ

Organism
Shigella flexneri
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0145 protein YbjQUniRule annotation
Gene namesi
Name:ybjQUniRule annotation
Ordered Locus Names:SF0821, S0862
OrganismiShigella flexneri
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeShigella
Proteomesi
  • UP000002673 Componenti: Chromosome
  • UP000001006 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002258461 – 107UPF0145 protein YbjQAdd BLAST107

Structurei

Secondary structure

1107
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 8Combined sources4
Beta strandi12 – 27Combined sources16
Helixi29 – 35Combined sources7
Turni36 – 38Combined sources3
Beta strandi41 – 44Combined sources4
Turni45 – 47Combined sources3
Helixi50 – 72Combined sources23
Beta strandi75 – 88Combined sources14
Beta strandi93 – 107Combined sources15

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y2IX-ray2.30A/B/C/D/E1-107[»]
ProteinModelPortaliQ83LS2
SMRiQ83LS2
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ83LS2

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0145 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K8R Bacteria
COG0393 LUCA
HOGENOMiHOG000217614
OMAiVDFEISM

Family and domain databases

HAMAPiMF_00338 UPF0145, 1 hit
InterProiView protein in InterPro
IPR002765 UPF0145
IPR035439 UPF0145_dom_sf
PfamiView protein in Pfam
PF01906 YbjQ_1, 1 hit
SUPFAMiSSF117782 SSF117782, 1 hit

Sequencei

Sequence statusi: Complete.

Q83LS2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQFSTTPTLE GLTIVEYCGV VTGEAILGAN IFRDFFAGIR DIVGGRSGAY
60 70 80 90 100
EKELRKAREI AFEELGSQAR ALGADAVVGI DIDYETVGQN GSMLMVSVSG

TAVKTRR
Length:107
Mass (Da):11,422
Last modified:June 1, 2003 - v1
Checksum:i9D20C4DCDDF0B435
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA Translation: AAN42454.1
AE014073 Genomic DNA Translation: AAP16327.1
RefSeqiNP_706747.1, NC_004337.2
WP_001160722.1, NZ_MTPK01000036.1

Genome annotation databases

EnsemblBacteriaiAAN42454; AAN42454; SF0821
AAP16327; AAP16327; S0862
GeneIDi1023799
KEGGisfl:SF0821
sfx:S0862
PATRICifig|198214.7.peg.950

Similar proteinsi

Entry informationi

Entry nameiYBJQ_SHIFL
AccessioniPrimary (citable) accession number: Q83LS2
Secondary accession number(s): Q7C2D3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: June 1, 2003
Last modified: April 25, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome
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Main funding by: National Institutes of Health