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Protein

UPF0145 protein YbjQ

Gene

ybjQ

Organism
Shigella flexneri
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0145 protein YbjQUniRule annotation
Gene namesi
Name:ybjQUniRule annotation
Ordered Locus Names:SF0821, S0862
OrganismiShigella flexneri
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
Proteomesi
  • UP000002673 Componenti: Chromosome
  • UP000001006 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 107107UPF0145 protein YbjQPRO_0000225846Add
BLAST

Proteomic databases

PaxDbiQ83LS2.

Interactioni

Protein-protein interaction databases

STRINGi198214.SF0821.

Structurei

Secondary structure

1
107
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 84Combined sources
Beta strandi12 – 2716Combined sources
Helixi29 – 357Combined sources
Turni36 – 383Combined sources
Beta strandi41 – 444Combined sources
Turni45 – 473Combined sources
Helixi50 – 7223Combined sources
Beta strandi75 – 8814Combined sources
Beta strandi93 – 10715Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y2IX-ray2.30A/B/C/D/E1-107[»]
ProteinModelPortaliQ83LS2.
SMRiQ83LS2. Positions 1-107.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ83LS2.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0145 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K8R. Bacteria.
COG0393. LUCA.
HOGENOMiHOG000217614.
OMAiIREYRGI.
OrthoDBiEOG6TN47M.

Family and domain databases

Gene3Di3.30.110.70. 1 hit.
HAMAPiMF_00338. UPF0145.
InterProiIPR002765. UPF0145.
[Graphical view]
PfamiPF01906. YbjQ_1. 1 hit.
[Graphical view]
SUPFAMiSSF117782. SSF117782. 1 hit.

Sequencei

Sequence statusi: Complete.

Q83LS2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQFSTTPTLE GLTIVEYCGV VTGEAILGAN IFRDFFAGIR DIVGGRSGAY
60 70 80 90 100
EKELRKAREI AFEELGSQAR ALGADAVVGI DIDYETVGQN GSMLMVSVSG

TAVKTRR
Length:107
Mass (Da):11,422
Last modified:June 1, 2003 - v1
Checksum:i9D20C4DCDDF0B435
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42454.1.
AE014073 Genomic DNA. Translation: AAP16327.1.
RefSeqiNP_706747.1. NC_004337.2.
WP_001160722.1. NZ_LM651928.1.

Genome annotation databases

EnsemblBacteriaiAAN42454; AAN42454; SF0821.
AAP16327; AAP16327; S0862.
GeneIDi1023799.
KEGGisfl:SF0821.
sft:NCTC1_00821.
sfx:S0862.
PATRICi18702843. VBIShiFle31049_0931.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42454.1.
AE014073 Genomic DNA. Translation: AAP16327.1.
RefSeqiNP_706747.1. NC_004337.2.
WP_001160722.1. NZ_LM651928.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y2IX-ray2.30A/B/C/D/E1-107[»]
ProteinModelPortaliQ83LS2.
SMRiQ83LS2. Positions 1-107.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198214.SF0821.

Proteomic databases

PaxDbiQ83LS2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN42454; AAN42454; SF0821.
AAP16327; AAP16327; S0862.
GeneIDi1023799.
KEGGisfl:SF0821.
sft:NCTC1_00821.
sfx:S0862.
PATRICi18702843. VBIShiFle31049_0931.

Phylogenomic databases

eggNOGiENOG4105K8R. Bacteria.
COG0393. LUCA.
HOGENOMiHOG000217614.
OMAiIREYRGI.
OrthoDBiEOG6TN47M.

Miscellaneous databases

EvolutionaryTraceiQ83LS2.

Family and domain databases

Gene3Di3.30.110.70. 1 hit.
HAMAPiMF_00338. UPF0145.
InterProiIPR002765. UPF0145.
[Graphical view]
PfamiPF01906. YbjQ_1. 1 hit.
[Graphical view]
SUPFAMiSSF117782. SSF117782. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157."
    Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J., Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L., Xue Y.
    , Zhao A., Gao Y., Zhu J., Kan B., Ding K., Chen S., Cheng H., Yao Z., He B., Chen R., Ma D., Qiang B., Wen Y., Hou Y., Yu J.
    Nucleic Acids Res. 30:4432-4441(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 301 / Serotype 2a.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700930 / 2457T / Serotype 2a.

Entry informationi

Entry nameiYBJQ_SHIFL
AccessioniPrimary (citable) accession number: Q83LS2
Secondary accession number(s): Q7C2D3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: June 1, 2003
Last modified: July 6, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.