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Protein

UPF0176 protein YceA

Gene

yceA

Organism
Shigella flexneri
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei200Cysteine persulfide intermediateUniRule annotation1

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0176 protein YceAUniRule annotation
Gene namesi
Name:yceAUniRule annotation
Ordered Locus Names:SF1062, S1139
OrganismiShigella flexneri
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeShigella
Proteomesi
  • UP000002673 Componenti: Chromosome
  • UP000001006 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000137791 – 350UPF0176 protein YceAAdd BLAST350

Proteomic databases

PaxDbiQ83LJ0.

Interactioni

Protein-protein interaction databases

STRINGi198214.SF1062.

Structurei

3D structure databases

ProteinModelPortaliQ83LJ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini146 – 240RhodaneseUniRule annotationAdd BLAST95

Sequence similaritiesi

Belongs to the UPF0176 family.UniRule annotation
Contains 1 rhodanese domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C72. Bacteria.
COG1054. LUCA.
HOGENOMiHOG000034809.
KOiK07146.
OMAiCDTHVNC.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
HAMAPiMF_00469. UPF0176. 1 hit.
InterProiIPR001763. Rhodanese-like_dom.
IPR022111. Rhodanese_C.
IPR020936. UPF0176.
[Graphical view]
PfamiPF00581. Rhodanese. 1 hit.
PF12368. Rhodanese_C. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q83LJ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVLHNRISN DALKAKMLAE SEPRTTISFY KYFHIADPKA TRDALYQLFT
60 70 80 90 100
ALNVFGRVYL AHEGINAQIS VPASNVETFR AQLYAFDPAL EGLRLNIALD
110 120 130 140 150
DDGKSFWVLR MKVRDRIVAD GIDDPHFDAS NVGEYLQAAE VNAMLDDPDA
160 170 180 190 200
LFIDMRNHYE YEVGHFENAL EIPADTFREQ LPKAVEMMQA HKDKKIVMYC
210 220 230 240 250
TGGIRCEKAS AWMKHNGFNK VWHIEGGIIE YARKAREQGL PVRFIGKNFV
260 270 280 290 300
FDERMGERIS DEIIAHCHQC GAPCDSHTNC KNDGCHLLFI QCPVCAEKYK
310 320 330 340 350
GCCSEICCEE SALPPEEQRR RRAGRENGNK IFNKSRGRLN TTLGIPDPTE
Length:350
Mass (Da):39,735
Last modified:July 5, 2005 - v4
Checksum:i61AB5F317B0C24DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42684.2.
AE014073 Genomic DNA. Translation: AAP16570.1.
RefSeqiNP_706977.2. NC_004337.2.
WP_001144616.1. NZ_LVJC01000002.1.

Genome annotation databases

EnsemblBacteriaiAAN42684; AAN42684; SF1062.
AAP16570; AAP16570; S1139.
GeneIDi1026260.
KEGGisfl:SF1062.
sft:NCTC1_01109.
sfx:S1139.
PATRICi18703468. VBIShiFle31049_1240.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE005674 Genomic DNA. Translation: AAN42684.2.
AE014073 Genomic DNA. Translation: AAP16570.1.
RefSeqiNP_706977.2. NC_004337.2.
WP_001144616.1. NZ_LVJC01000002.1.

3D structure databases

ProteinModelPortaliQ83LJ0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198214.SF1062.

Proteomic databases

PaxDbiQ83LJ0.

Protocols and materials databases

DNASUi1077536.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN42684; AAN42684; SF1062.
AAP16570; AAP16570; S1139.
GeneIDi1026260.
KEGGisfl:SF1062.
sft:NCTC1_01109.
sfx:S1139.
PATRICi18703468. VBIShiFle31049_1240.

Phylogenomic databases

eggNOGiENOG4105C72. Bacteria.
COG1054. LUCA.
HOGENOMiHOG000034809.
KOiK07146.
OMAiCDTHVNC.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
HAMAPiMF_00469. UPF0176. 1 hit.
InterProiIPR001763. Rhodanese-like_dom.
IPR022111. Rhodanese_C.
IPR020936. UPF0176.
[Graphical view]
PfamiPF00581. Rhodanese. 1 hit.
PF12368. Rhodanese_C. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCEA_SHIFL
AccessioniPrimary (citable) accession number: Q83LJ0
Secondary accession number(s): Q7UCX7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 5, 2005
Last modified: November 2, 2016
This is version 76 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.