DNA replication and repair protein recF - Coxiella burnetii

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Reviewed, UniProtKB/Swiss-Prot Q83FD6 (RECF_COXBU)

Last modified June 16, 2009. Version 36. History...

Clusters with 100%, 90%, 50% identity |

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
DNA replication and repair protein recF

Gene names

Name:	recF
Ordered Locus Names:	CBU_0003

Organism

Coxiella burnetii [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Legionellales › Coxiellaceae › Coxiella

Protein attributes

Sequence length	357 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the recF family.

Ontologies

Keywords
Biological process	DNA damage DNA repair DNA replication SOS response
Cellular component	Cytoplasm
Ligand	ATP-binding DNA-binding Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA repair Inferred from electronic annotation. Source: HAMAP DNA replication Inferred from electronic annotation. Source: HAMAP SOS response Inferred from electronic annotation. Source: HAMAP
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP single-stranded DNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

357

DNA replication and repair protein recF HAMAP MF_00365

PRO_0000196412

Regions

Nucleotide binding

8

ATP Potential

Sequences

Sequence

Length

Mass (Da)

Tools

Q83FD6-1 [UniParc].

Last modified December 16, 2008. Version 2.
Checksum: 55560EBA41080DC7
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357

41,039

        10         20         30         40         50         60 
MPYIGSLKVN QFRNLADVDI TPHSQFNFFF GQNGAGKTSI LESIYYLSVG RSFRTHLPQR 

        70         80         90        100        110        120 
LIQDNTDRFL IFITLYNGTQ FIPLGVERDC HGDRCLRING ETASSWSLAA KRLPLCSLSA 

       130        140        150        160        170        180 
MSHRFLLDGP RVRRQFLDWL MFHVEPSFFS IWQRLQRSLK QRNAALKAKL PLGEITHWDK 

       190        200        210        220        230        240 
MLVEDGERLH QLRQNVVTEF KPLFTQMLQQ FLPAYPLIGH YFRGWSEKYS LMEQLQINLK 

       250        260        270        280        290        300 
QDLQRGYTQA GPQRADFRLT LGDLPAQDIL SQGQQKLVTY ALHFAQGLLL KEKTGISPIY 

       310        320        330        340        350 
LIDDLPAELD ANKRDCVIDL VNCLESQVFI SGIDPNEIRL PPHSTLFHVK HGKVAAL

References

[1]

"Complete genome sequence of the Q-fever pathogen, Coxiella burnetii."
Seshadri R., Paulsen I.T., Eisen J.A., Read T.D., Nelson K.E., Nelson W.C., Ward N.L., Tettelin H., Davidsen T.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Brinkac L.M., Madupu R., Dodson R.J., Khouri H.M., Lee K.H., Carty H.A.

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Heidelberg J.F.
Proc. Natl. Acad. Sci. U.S.A. 100:5455-5460(2003) [PubMed: 12704232] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nine Mile phase I / RSA 493.

Cross-references

Sequence databases
	AE016828 Genomic DNA. Translation: AAO89573.2.
RefSeq	NP_819059.2.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	1207923.
GenomeReviews	Gene locus CBU_0003 in contig AE016828_GR.
KEGG	cbu:CBU_0003.
NMPDR	fig\|227377.1.peg.3.
TIGR	CBU_0003.
Phylogenomic databases
HOGENOM	Q83FD6.
Enzyme and pathway databases
BioCyc	CBUR227377:CBU_0003-MON.
Family and domain databases
HAMAP	MF_00365. [Tree]
InterPro	IPR001238. DNA-binding_RecF. IPR018078. DNA-binding_RecF_CS. IPR003395. RecF/RecN/SMC_N. [Graphical view]
Pfam	PF02463. SMC_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR00611. recf. 1 hit.
PROSITE	PS00617. RECF_1. 1 hit. PS00618. RECF_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RECF_COXBU

Accession

Primary (citable) accession number: Q83FD6

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 16, 2004
Last sequence update:	December 16, 2008
Last modified:	June 16, 2009
This is version 36 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Coxiella burnetii

Coxiella burnetii (strain RSA 493): entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents