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Q83ET0

- RPOC_COXBU

UniProt

Q83ET0 - RPOC_COXBU

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Protein
DNA-directed RNA polymerase subunit beta'
Gene
rpoC, CBU_0232
Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-238-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
Short name:
RNAP subunit beta'
Alternative name(s):
RNA polymerase subunit beta'
Transcriptase subunit beta'
Gene namesi
Name:rpoC
Ordered Locus Names:CBU_0232
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
ProteomesiUP000002671: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14141414DNA-directed RNA polymerase subunit beta'UniRule annotation
PRO_0000067738Add
BLAST

Proteomic databases

PRIDEiQ83ET0.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity.

Protein-protein interaction databases

STRINGi227377.CBU_0232.

Structurei

3D structure databases

ProteinModelPortaliQ83ET0.
SMRiQ83ET0. Positions 16-165, 939-1128.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiAYDSEFL.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
MF_01323. RNApol_bact_RpoC1.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q83ET0-1 [UniParc]FASTAAdd to Basket

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MRDLVKQLKS EKHTAEFDAL RIKLASPEEV RSWSYGEVKK PETINYRTFK     50
PEREGLFCAK IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE 100
RMGHIELASP VAHIWYLKSL PSRIGLLLDV TLRDIERILY FEAYVVVDPG 150
MTDLEPRQLL SEEAYLDALE EYGDDFTALM GAEAIQRLLR DIDVEAEVEA 200
LRTELQTTTS ETKTKKLTKR LKVLSAFLES GNKPEWMILT VLPVLPPDLR 250
PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLNAPDI IVRNEKRMLQ 300
EAVDALLDNG RRGRAILGSN RRQLKSLADM IKGKSGRFRQ NLLGKRVDYS 350
GRSVIVVGPT LKLHQAGLPK KMALELFKPF IFSKLQLRGL ATTVKAAKKL 400
VENEGPEVWD ILEEVIREHP ILLNRAPTLH RLGIQAFEPV LVEGKAIQLH 450
PLVCTAYNAD FDGDQMAVHV PLTLEAQLEA RSLMMSTNNV LHPANGEPII 500
VPSQDVVLGL YYITRDRVNA KGEGMRFADA QEVVRAYEND QVDLHARITV 550
RIKEGILNEA GEIEESDRLV NTAAGRILLW QIVPKGLPFA LVDQPMTKKA 600
VTKLLDFCYR NLGLKTTVIF ADKLMYMGFH YATHSGVSIG INDLVVPDQK 650
EAIISRAEDE VREIEKQYAS GLVTHGERRN KVIDIWSRTN DQVAKAMMEK 700
IAVEKVKDAE GKEVAQSSFN SIYMMSDSGA RGSAAQTRQL AGMRGLMARP 750
DGTIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL 800
VDVAQDLVVT EHDCGTEASI EMMPHIEGGD VVEPLRERVL GRILAEPVMD 850
PKSRKELLAK DTFLDERRVD ILEEHSIDRV RVRSAITCEA RYGICSMCYG 900
RDLARGHVVN VGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRATAANNI 950
GVKSTGKIKL RNLKTVEQAQ GNLVAVSRSG ELVVQDLQGS EREHYKVPYG 1000
ATISVRDGDS VKAGQIVAQW DPHTHPIITE VAGTLRFVDL VDGVTMNRQT 1050
DELTGLSSIV ITSTKQRSAS GKELRPMVKL VDKNDDDLFL PGGKVPAHYF 1100
LPEGTFLTKE DGTTVNIGDV LARIPQETSK TRDITGGLPR VADLFEARRP 1150
KDAAILAEIS GVVSFGKDTK DKGRLIITAP DGTTHEELIP KWRHVSVFEG 1200
ETVEKGEVIA DGPRDPHDIL RLLGVNALAN YIVNEVQEVY RLQGVKINDK 1250
HIEVIVRQML RKVKITQPGD TDLLQNEQVE RTRVREENEK IIKKDGTVAK 1300
VEPILLGITK ASLATESFIS AASFQETTRV LTAASVAGKR DDLRGLKENV 1350
IVGRLIPAGT GFSYHQQRRA VAGKSVEEKE IEEKRVTASE AEQALSEALK 1400
SSAPQEAKAA QKDE 1414
Length:1,414
Mass (Da):157,104
Last modified:June 1, 2003 - v1
Checksum:iA89BD7F533E3A5BE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE016828 Genomic DNA. Translation: AAO89790.1.
RefSeqiNP_819276.1. NC_002971.3.

Genome annotation databases

EnsemblBacteriaiAAO89790; AAO89790; CBU_0232.
GeneIDi1208113.
KEGGicbu:CBU_0232.
PATRICi17929155. VBICoxBur82552_0226.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE016828 Genomic DNA. Translation: AAO89790.1 .
RefSeqi NP_819276.1. NC_002971.3.

3D structure databases

ProteinModelPortali Q83ET0.
SMRi Q83ET0. Positions 16-165, 939-1128.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 227377.CBU_0232.

Proteomic databases

PRIDEi Q83ET0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAO89790 ; AAO89790 ; CBU_0232 .
GeneIDi 1208113.
KEGGi cbu:CBU_0232.
PATRICi 17929155. VBICoxBur82552_0226.

Phylogenomic databases

eggNOGi COG0086.
HOGENOMi HOG000218386.
KOi K03046.
OMAi AYDSEFL.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci CBUR227377:GJ7S-238-MONOMER.

Family and domain databases

HAMAPi MF_01322. RNApol_bact_RpoC.
MF_01323. RNApol_bact_RpoC1.
InterProi IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view ]
Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view ]
SMARTi SM00663. RPOLA_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RSA 493 / Nine Mile phase I.

Entry informationi

Entry nameiRPOC_COXBU
AccessioniPrimary (citable) accession number: Q83ET0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 16, 2004
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Coxiella burnetii
    Coxiella burnetii (strain RSA 493): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi