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Q83ET0

- RPOC_COXBU

UniProt

Q83ET0 - RPOC_COXBU

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Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-238-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'UniRule annotation
Transcriptase subunit beta'UniRule annotation
Gene namesi
Name:rpoCUniRule annotation
Ordered Locus Names:CBU_0232
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
ProteomesiUP000002671: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14141414DNA-directed RNA polymerase subunit beta'PRO_0000067738Add
BLAST

Proteomic databases

PRIDEiQ83ET0.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi227377.CBU_0232.

Structurei

3D structure databases

ProteinModelPortaliQ83ET0.
SMRiQ83ET0. Positions 16-165, 939-1128.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiAYDSEFL.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
MF_01323. RNApol_bact_RpoC1.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q83ET0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRDLVKQLKS EKHTAEFDAL RIKLASPEEV RSWSYGEVKK PETINYRTFK
60 70 80 90 100
PEREGLFCAK IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE
110 120 130 140 150
RMGHIELASP VAHIWYLKSL PSRIGLLLDV TLRDIERILY FEAYVVVDPG
160 170 180 190 200
MTDLEPRQLL SEEAYLDALE EYGDDFTALM GAEAIQRLLR DIDVEAEVEA
210 220 230 240 250
LRTELQTTTS ETKTKKLTKR LKVLSAFLES GNKPEWMILT VLPVLPPDLR
260 270 280 290 300
PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLNAPDI IVRNEKRMLQ
310 320 330 340 350
EAVDALLDNG RRGRAILGSN RRQLKSLADM IKGKSGRFRQ NLLGKRVDYS
360 370 380 390 400
GRSVIVVGPT LKLHQAGLPK KMALELFKPF IFSKLQLRGL ATTVKAAKKL
410 420 430 440 450
VENEGPEVWD ILEEVIREHP ILLNRAPTLH RLGIQAFEPV LVEGKAIQLH
460 470 480 490 500
PLVCTAYNAD FDGDQMAVHV PLTLEAQLEA RSLMMSTNNV LHPANGEPII
510 520 530 540 550
VPSQDVVLGL YYITRDRVNA KGEGMRFADA QEVVRAYEND QVDLHARITV
560 570 580 590 600
RIKEGILNEA GEIEESDRLV NTAAGRILLW QIVPKGLPFA LVDQPMTKKA
610 620 630 640 650
VTKLLDFCYR NLGLKTTVIF ADKLMYMGFH YATHSGVSIG INDLVVPDQK
660 670 680 690 700
EAIISRAEDE VREIEKQYAS GLVTHGERRN KVIDIWSRTN DQVAKAMMEK
710 720 730 740 750
IAVEKVKDAE GKEVAQSSFN SIYMMSDSGA RGSAAQTRQL AGMRGLMARP
760 770 780 790 800
DGTIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL
810 820 830 840 850
VDVAQDLVVT EHDCGTEASI EMMPHIEGGD VVEPLRERVL GRILAEPVMD
860 870 880 890 900
PKSRKELLAK DTFLDERRVD ILEEHSIDRV RVRSAITCEA RYGICSMCYG
910 920 930 940 950
RDLARGHVVN VGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRATAANNI
960 970 980 990 1000
GVKSTGKIKL RNLKTVEQAQ GNLVAVSRSG ELVVQDLQGS EREHYKVPYG
1010 1020 1030 1040 1050
ATISVRDGDS VKAGQIVAQW DPHTHPIITE VAGTLRFVDL VDGVTMNRQT
1060 1070 1080 1090 1100
DELTGLSSIV ITSTKQRSAS GKELRPMVKL VDKNDDDLFL PGGKVPAHYF
1110 1120 1130 1140 1150
LPEGTFLTKE DGTTVNIGDV LARIPQETSK TRDITGGLPR VADLFEARRP
1160 1170 1180 1190 1200
KDAAILAEIS GVVSFGKDTK DKGRLIITAP DGTTHEELIP KWRHVSVFEG
1210 1220 1230 1240 1250
ETVEKGEVIA DGPRDPHDIL RLLGVNALAN YIVNEVQEVY RLQGVKINDK
1260 1270 1280 1290 1300
HIEVIVRQML RKVKITQPGD TDLLQNEQVE RTRVREENEK IIKKDGTVAK
1310 1320 1330 1340 1350
VEPILLGITK ASLATESFIS AASFQETTRV LTAASVAGKR DDLRGLKENV
1360 1370 1380 1390 1400
IVGRLIPAGT GFSYHQQRRA VAGKSVEEKE IEEKRVTASE AEQALSEALK
1410
SSAPQEAKAA QKDE
Length:1,414
Mass (Da):157,104
Last modified:June 1, 2003 - v1
Checksum:iA89BD7F533E3A5BE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE016828 Genomic DNA. Translation: AAO89790.1.
RefSeqiNP_819276.1. NC_002971.3.
WP_010957448.1. NC_002971.3.

Genome annotation databases

EnsemblBacteriaiAAO89790; AAO89790; CBU_0232.
GeneIDi1208113.
KEGGicbu:CBU_0232.
PATRICi17929155. VBICoxBur82552_0226.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE016828 Genomic DNA. Translation: AAO89790.1 .
RefSeqi NP_819276.1. NC_002971.3.
WP_010957448.1. NC_002971.3.

3D structure databases

ProteinModelPortali Q83ET0.
SMRi Q83ET0. Positions 16-165, 939-1128.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 227377.CBU_0232.

Proteomic databases

PRIDEi Q83ET0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAO89790 ; AAO89790 ; CBU_0232 .
GeneIDi 1208113.
KEGGi cbu:CBU_0232.
PATRICi 17929155. VBICoxBur82552_0226.

Phylogenomic databases

eggNOGi COG0086.
HOGENOMi HOG000218386.
KOi K03046.
OMAi AYDSEFL.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci CBUR227377:GJ7S-238-MONOMER.

Family and domain databases

HAMAPi MF_01322. RNApol_bact_RpoC.
MF_01323. RNApol_bact_RpoC1.
InterProi IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view ]
Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view ]
SMARTi SM00663. RPOLA_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RSA 493 / Nine Mile phase I.

Entry informationi

Entry nameiRPOC_COXBU
AccessioniPrimary (citable) accession number: Q83ET0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 16, 2004
Last sequence update: June 1, 2003
Last modified: October 29, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Coxiella burnetii
    Coxiella burnetii (strain RSA 493): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3