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Q83ET0

- RPOC_COXBU

UniProt

Q83ET0 - RPOC_COXBU

Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciCBUR227377:GJ7S-238-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
    Short name:
    RNAP subunit beta'UniRule annotation
    Alternative name(s):
    RNA polymerase subunit beta'UniRule annotation
    Transcriptase subunit beta'UniRule annotation
    Gene namesi
    Name:rpoCUniRule annotation
    Ordered Locus Names:CBU_0232
    OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
    Taxonomic identifieri227377 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
    ProteomesiUP000002671: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 14141414DNA-directed RNA polymerase subunit beta'PRO_0000067738Add
    BLAST

    Proteomic databases

    PRIDEiQ83ET0.

    Interactioni

    Subunit structurei

    The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

    Protein-protein interaction databases

    STRINGi227377.CBU_0232.

    Structurei

    3D structure databases

    ProteinModelPortaliQ83ET0.
    SMRiQ83ET0. Positions 16-165, 939-1128.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNA polymerase beta' chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0086.
    HOGENOMiHOG000218386.
    KOiK03046.
    OMAiAYDSEFL.
    OrthoDBiEOG6M9DS6.

    Family and domain databases

    HAMAPiMF_01322. RNApol_bact_RpoC.
    MF_01323. RNApol_bact_RpoC1.
    InterProiIPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view]
    PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view]
    SMARTiSM00663. RPOLA_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q83ET0-1 [UniParc]FASTAAdd to Basket

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    MRDLVKQLKS EKHTAEFDAL RIKLASPEEV RSWSYGEVKK PETINYRTFK     50
    PEREGLFCAK IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE 100
    RMGHIELASP VAHIWYLKSL PSRIGLLLDV TLRDIERILY FEAYVVVDPG 150
    MTDLEPRQLL SEEAYLDALE EYGDDFTALM GAEAIQRLLR DIDVEAEVEA 200
    LRTELQTTTS ETKTKKLTKR LKVLSAFLES GNKPEWMILT VLPVLPPDLR 250
    PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLNAPDI IVRNEKRMLQ 300
    EAVDALLDNG RRGRAILGSN RRQLKSLADM IKGKSGRFRQ NLLGKRVDYS 350
    GRSVIVVGPT LKLHQAGLPK KMALELFKPF IFSKLQLRGL ATTVKAAKKL 400
    VENEGPEVWD ILEEVIREHP ILLNRAPTLH RLGIQAFEPV LVEGKAIQLH 450
    PLVCTAYNAD FDGDQMAVHV PLTLEAQLEA RSLMMSTNNV LHPANGEPII 500
    VPSQDVVLGL YYITRDRVNA KGEGMRFADA QEVVRAYEND QVDLHARITV 550
    RIKEGILNEA GEIEESDRLV NTAAGRILLW QIVPKGLPFA LVDQPMTKKA 600
    VTKLLDFCYR NLGLKTTVIF ADKLMYMGFH YATHSGVSIG INDLVVPDQK 650
    EAIISRAEDE VREIEKQYAS GLVTHGERRN KVIDIWSRTN DQVAKAMMEK 700
    IAVEKVKDAE GKEVAQSSFN SIYMMSDSGA RGSAAQTRQL AGMRGLMARP 750
    DGTIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL 800
    VDVAQDLVVT EHDCGTEASI EMMPHIEGGD VVEPLRERVL GRILAEPVMD 850
    PKSRKELLAK DTFLDERRVD ILEEHSIDRV RVRSAITCEA RYGICSMCYG 900
    RDLARGHVVN VGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRATAANNI 950
    GVKSTGKIKL RNLKTVEQAQ GNLVAVSRSG ELVVQDLQGS EREHYKVPYG 1000
    ATISVRDGDS VKAGQIVAQW DPHTHPIITE VAGTLRFVDL VDGVTMNRQT 1050
    DELTGLSSIV ITSTKQRSAS GKELRPMVKL VDKNDDDLFL PGGKVPAHYF 1100
    LPEGTFLTKE DGTTVNIGDV LARIPQETSK TRDITGGLPR VADLFEARRP 1150
    KDAAILAEIS GVVSFGKDTK DKGRLIITAP DGTTHEELIP KWRHVSVFEG 1200
    ETVEKGEVIA DGPRDPHDIL RLLGVNALAN YIVNEVQEVY RLQGVKINDK 1250
    HIEVIVRQML RKVKITQPGD TDLLQNEQVE RTRVREENEK IIKKDGTVAK 1300
    VEPILLGITK ASLATESFIS AASFQETTRV LTAASVAGKR DDLRGLKENV 1350
    IVGRLIPAGT GFSYHQQRRA VAGKSVEEKE IEEKRVTASE AEQALSEALK 1400
    SSAPQEAKAA QKDE 1414
    Length:1,414
    Mass (Da):157,104
    Last modified:June 1, 2003 - v1
    Checksum:iA89BD7F533E3A5BE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016828 Genomic DNA. Translation: AAO89790.1.
    RefSeqiNP_819276.1. NC_002971.3.

    Genome annotation databases

    EnsemblBacteriaiAAO89790; AAO89790; CBU_0232.
    GeneIDi1208113.
    KEGGicbu:CBU_0232.
    PATRICi17929155. VBICoxBur82552_0226.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016828 Genomic DNA. Translation: AAO89790.1 .
    RefSeqi NP_819276.1. NC_002971.3.

    3D structure databases

    ProteinModelPortali Q83ET0.
    SMRi Q83ET0. Positions 16-165, 939-1128.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 227377.CBU_0232.

    Proteomic databases

    PRIDEi Q83ET0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAO89790 ; AAO89790 ; CBU_0232 .
    GeneIDi 1208113.
    KEGGi cbu:CBU_0232.
    PATRICi 17929155. VBICoxBur82552_0226.

    Phylogenomic databases

    eggNOGi COG0086.
    HOGENOMi HOG000218386.
    KOi K03046.
    OMAi AYDSEFL.
    OrthoDBi EOG6M9DS6.

    Enzyme and pathway databases

    BioCyci CBUR227377:GJ7S-238-MONOMER.

    Family and domain databases

    HAMAPi MF_01322. RNApol_bact_RpoC.
    MF_01323. RNApol_bact_RpoC1.
    InterProi IPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view ]
    Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view ]
    SMARTi SM00663. RPOLA_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RSA 493 / Nine Mile phase I.

    Entry informationi

    Entry nameiRPOC_COXBU
    AccessioniPrimary (citable) accession number: Q83ET0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 16, 2004
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Coxiella burnetii
      Coxiella burnetii (strain RSA 493): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3