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Protein

30S ribosomal protein S8

Gene

rpsH

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-258-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S8UniRule annotation
Gene namesi
Name:rpsHUniRule annotation
Ordered Locus Names:CBU_0252
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
ProteomesiUP000002671 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13013030S ribosomal protein S8PRO_0000126402Add
BLAST

Proteomic databases

PRIDEiQ83ER2.

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.UniRule annotation

Protein-protein interaction databases

STRINGi227377.CBU_0252.

Structurei

3D structure databases

ProteinModelPortaliQ83ER2.
SMRiQ83ER2. Positions 2-130.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0096.
HOGENOMiHOG000204095.
KOiK02994.
OMAiRIYKNTR.
OrthoDBiEOG6Z0QH1.

Family and domain databases

HAMAPiMF_01302_B. Ribosomal_S8_B.
InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q83ER2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMQDPISDML TRIRNAQAVR KKEVVMPRSK LKMSIANVLK EEGYIVDYRE
60 70 80 90 100
EGDLTKAQLV ITLKYHEGES VISEIRRVSS PALQVYKSKD ELPKVKNGLG
110 120 130
IAIISTSKGV MSDRQARRLG EGGEVLCYVS
Length:130
Mass (Da):14,569
Last modified:June 1, 2003 - v1
Checksum:iC08C350D7739208D
GO

Sequence cautioni

The sequence AAO89810.2 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO89810.2. Different initiation.
RefSeqiNP_819296.2. NC_002971.3.

Genome annotation databases

EnsemblBacteriaiAAO89810; AAO89810; CBU_0252.
GeneIDi1208133.
KEGGicbu:CBU_0252.
PATRICi17929197. VBICoxBur82552_0247.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO89810.2. Different initiation.
RefSeqiNP_819296.2. NC_002971.3.

3D structure databases

ProteinModelPortaliQ83ER2.
SMRiQ83ER2. Positions 2-130.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi227377.CBU_0252.

Proteomic databases

PRIDEiQ83ER2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO89810; AAO89810; CBU_0252.
GeneIDi1208133.
KEGGicbu:CBU_0252.
PATRICi17929197. VBICoxBur82552_0247.

Phylogenomic databases

eggNOGiCOG0096.
HOGENOMiHOG000204095.
KOiK02994.
OMAiRIYKNTR.
OrthoDBiEOG6Z0QH1.

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-258-MONOMER.

Family and domain databases

HAMAPiMF_01302_B. Ribosomal_S8_B.
InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RSA 493 / Nine Mile phase I.

Entry informationi

Entry nameiRS8_COXBU
AccessioniPrimary (citable) accession number: Q83ER2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2005
Last sequence update: June 1, 2003
Last modified: February 4, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Coxiella burnetii
    Coxiella burnetii (strain RSA 493): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.