Reviewed, UniProtKB/Swiss-Prot Q83EQ3 (RS4_COXBU)

Names and origin

Protein names

Recommended name:
    30S ribosomal protein S4

Gene names

Name:	rpsD
Ordered Locus Names:	CBU_0262

Organism

Coxiella burnetii [Complete proteome] [HAMAP]

Taxonomic identifier

777 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Legionellales › Coxiellaceae › Coxiella

Protein attributes

Sequence length	206 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit By similarity. With S5 and S12 plays an important role in translational accuracy By similarity.
Subunit structure	Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity.
Sequence similarities	Belongs to the ribosomal protein S4P family. Contains 1 S4 RNA-binding domain.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 206	206	30S ribosomal protein S4 HAMAP MF_01306		PRO_0000132376
Regions
	Domain	96 – 158	63	S4 RNA-binding

Sequences

	Sequence		Length	Mass (Da)
	Q83EQ3-1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: D646A2AC9024AA15	FASTA	206	23,730
	10 20 30 40 50 60 MARYLGPKCR LSRREKTDLQ LKSGIRAIDS KCNIERIPGM HWQRRGRTTD YGVQLRMKQM 70 80 90 100 110 120 IKRYYDVLEK QFANYYKQAD RLKGSTGDNL LKLLESRLDN VVYRMGFAAT RAEARQLISH 130 140 150 160 170 180 KAILVNGEVV NIPSYQVKPG DIIEVRSRAK GQLRIKGALE LAQQRAPISW IEVDTKKMTG 190 200 TFKEQPDVAE LPAEFKVNLV VELYSK

References

[1]

"Complete genome sequence of the Q-fever pathogen, Coxiella burnetii." Seshadri R., Paulsen I.T., Eisen J.A., Read T.D., Nelson K.E., Nelson W.C., Ward N.L., Tettelin H., Davidsen T.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Brinkac L.M., Madupu R., Dodson R.J., Khouri H.M., Lee K.H., Carty H.A. , Scanlan D., Heinzen R.A., Thompson H.A., Samuel J.E., Fraser C.M., Heidelberg J.F. Proc. Natl. Acad. Sci. U.S.A. 100:5455-5460(2003) [PubMed: 12704232] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nine Mile phase I / RSA 493.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE016828 Genomic DNA. Translation: AAO89820.1.
RefSeq	NP_819306.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	1208143.
GenomeReviews	Gene locus CBU_0262 in contig AE016828_GR.
KEGG	cbu:CBU_0262.
NMPDR	fig|227377.1.peg.250.
TIGR	CBU_0262.
Phylogenomic databases
HOGENOM	Q83EQ3.
OMA	QLVVELY
Enzyme and pathway databases
BioCyc	CBUR227377:CBU_0262-MON.
Family and domain databases
HAMAP	MF_01306. [Tree]
InterPro	IPR001912. Ribosomal_S4. IPR005709. Ribosomal_S4_bac-type. IPR018079. Ribosomal_S4_CS. IPR002942. S4_RNA_bd. [Graphical view]
PANTHER	PTHR11831. Ribosomal_S4. 1 hit.
Pfam	PF00163. Ribosomal_S4. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
TIGRFAMs	TIGR01017. rpsD_bact. 1 hit.
PROSITE	PS00632. RIBOSOMAL_S4. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS4_COXBU

Accession

Primary (citable) accession number: Q83EQ3

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 16, 2004
Last sequence update:	June 1, 2003
Last modified:	November 24, 2009
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)