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Protein

50S ribosomal protein L21

Gene

rplU

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds to 23S rRNA in the presence of protein L20.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-388-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L21UniRule annotation
Gene namesi
Name:rplUUniRule annotation
Ordered Locus Names:CBU_0385
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
ProteomesiUP000002671 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11511550S ribosomal protein L21PRO_0000269308Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L20.UniRule annotation

Protein-protein interaction databases

STRINGi227377.CBU_0385.

Structurei

3D structure databases

ProteinModelPortaliQ83EE0.
SMRiQ83EE0. Positions 1-102.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L21P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0261.
HOGENOMiHOG000036265.
KOiK02888.
OMAiQGHRQQY.
OrthoDBiEOG6TJ84X.

Family and domain databases

HAMAPiMF_01363. Ribosomal_L21.
InterProiIPR028909. L21p-like.
IPR001787. Ribosomal_L21.
IPR018258. Ribosomal_L21_CS.
[Graphical view]
PfamiPF00829. Ribosomal_L21p. 1 hit.
[Graphical view]
SUPFAMiSSF141091. SSF141091. 1 hit.
TIGRFAMsiTIGR00061. L21. 1 hit.
PROSITEiPS01169. RIBOSOMAL_L21. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q83EE0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYAIIKTGGK QYRVTEGQML KVEKLAQDVG QSVKFDDVLM VAAGDELHIG
60 70 80 90 100
TPSVKDAAVT AEVVDQGRQA KIEIIKFKRR KHHMKRQGHR QDFTAVKITE
110
IALGKAKKEV KTDGA
Length:115
Mass (Da):12,760
Last modified:December 12, 2006 - v2
Checksum:iD3AF66CD87731167
GO

Sequence cautioni

The sequence AAO89938.2 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO89938.2. Different initiation.
RefSeqiNP_819424.2. NC_002971.3.

Genome annotation databases

EnsemblBacteriaiAAO89938; AAO89938; CBU_0385.
GeneIDi1208268.
KEGGicbu:CBU_0385.
PATRICi17929467. VBICoxBur82552_0380.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO89938.2. Different initiation.
RefSeqiNP_819424.2. NC_002971.3.

3D structure databases

ProteinModelPortaliQ83EE0.
SMRiQ83EE0. Positions 1-102.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi227377.CBU_0385.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO89938; AAO89938; CBU_0385.
GeneIDi1208268.
KEGGicbu:CBU_0385.
PATRICi17929467. VBICoxBur82552_0380.

Phylogenomic databases

eggNOGiCOG0261.
HOGENOMiHOG000036265.
KOiK02888.
OMAiQGHRQQY.
OrthoDBiEOG6TJ84X.

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-388-MONOMER.

Family and domain databases

HAMAPiMF_01363. Ribosomal_L21.
InterProiIPR028909. L21p-like.
IPR001787. Ribosomal_L21.
IPR018258. Ribosomal_L21_CS.
[Graphical view]
PfamiPF00829. Ribosomal_L21p. 1 hit.
[Graphical view]
SUPFAMiSSF141091. SSF141091. 1 hit.
TIGRFAMsiTIGR00061. L21. 1 hit.
PROSITEiPS01169. RIBOSOMAL_L21. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RSA 493 / Nine Mile phase I.

Entry informationi

Entry nameiRL21_COXBU
AccessioniPrimary (citable) accession number: Q83EE0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: December 12, 2006
Last modified: January 7, 2015
This is version 69 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Coxiella burnetii
    Coxiella burnetii (strain RSA 493): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.