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Protein

50S ribosomal protein L31

Gene

rpmE

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds the 23S rRNA.UniRule annotation

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi16 – 161ZincUniRule annotation
Metal bindingi18 – 181ZincUniRule annotation
Metal bindingi37 – 371ZincUniRule annotation
Metal bindingi40 – 401ZincUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, RNA-binding, rRNA-binding, Zinc

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-896-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L31UniRule annotation
Gene namesi
Name:rpmEUniRule annotation
Ordered Locus Names:CBU_0905
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
ProteomesiUP000002671 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 797950S ribosomal protein L31PRO_0000173098Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi227377.CBU_0905.

Structurei

3D structure databases

ProteinModelPortaliQ83D39.
SMRiQ83D39. Positions 1-69.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L31P family. Type A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0254.
HOGENOMiHOG000284895.
KOiK02909.
OMAiDICNNCH.
OrthoDBiEOG6DVJZM.

Family and domain databases

HAMAPiMF_00501. Ribosomal_L31_1.
InterProiIPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view]
PfamiPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSiPR01249. RIBOSOMALL31.
TIGRFAMsiTIGR00105. L31. 1 hit.
PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q83D39-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKENIHPPYK QIKVTCSCGN TFMTGSTLDR ELHLEICSAC HPFYTGQQKM
60 70
VDTAGRVERF RKKYAKRRAA NASPEDEKK
Length:79
Mass (Da):9,078
Last modified:June 1, 2003 - v1
Checksum:i1BB719E17C8329FC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO90434.1.
RefSeqiNP_819920.1. NC_002971.3.
WP_005768737.1. NZ_CCNR01000044.1.

Genome annotation databases

EnsemblBacteriaiAAO90434; AAO90434; CBU_0905.
GeneIDi1208798.
KEGGicbu:CBU_0905.
PATRICi17930511. VBICoxBur82552_0892.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO90434.1.
RefSeqiNP_819920.1. NC_002971.3.
WP_005768737.1. NZ_CCNR01000044.1.

3D structure databases

ProteinModelPortaliQ83D39.
SMRiQ83D39. Positions 1-69.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi227377.CBU_0905.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO90434; AAO90434; CBU_0905.
GeneIDi1208798.
KEGGicbu:CBU_0905.
PATRICi17930511. VBICoxBur82552_0892.

Phylogenomic databases

eggNOGiCOG0254.
HOGENOMiHOG000284895.
KOiK02909.
OMAiDICNNCH.
OrthoDBiEOG6DVJZM.

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-896-MONOMER.

Family and domain databases

HAMAPiMF_00501. Ribosomal_L31_1.
InterProiIPR002150. Ribosomal_L31.
IPR027491. Ribosomal_L31_A.
[Graphical view]
PfamiPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSiPR01249. RIBOSOMALL31.
TIGRFAMsiTIGR00105. L31. 1 hit.
PROSITEiPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RSA 493 / Nine Mile phase I.

Entry informationi

Entry nameiRL31_COXBU
AccessioniPrimary (citable) accession number: Q83D39
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: June 1, 2003
Last modified: May 27, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Coxiella burnetii
    Coxiella burnetii (strain RSA 493): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.