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Q83C93

- ORN_COXBU

UniProt

Q83C93 - ORN_COXBU

Protein

Oligoribonuclease

Gene

orn

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    3'-to-5' exoribonuclease specific for small oligoribonucleotides.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei129 – 1291UniRule annotation

    GO - Molecular functioni

    1. exoribonuclease activity, producing 5'-phosphomonoesters Source: UniProtKB-HAMAP
    2. nucleic acid binding Source: InterPro

    Keywords - Molecular functioni

    Exonuclease, Hydrolase, Nuclease

    Enzyme and pathway databases

    BioCyciCBUR227377:GJ7S-1222-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    OligoribonucleaseUniRule annotation (EC:3.1.-.-UniRule annotation)
    Gene namesi
    Name:ornUniRule annotation
    Ordered Locus Names:CBU_1235
    OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
    Taxonomic identifieri227377 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
    ProteomesiUP000002671: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 183183OligoribonucleasePRO_0000111032Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi227377.CBU_1235.

    Structurei

    Secondary structure

    1
    183
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi8 – 1811
    Turni20 – 223
    Beta strandi25 – 339
    Beta strandi39 – 424
    Helixi52 – 554
    Helixi60 – 689
    Helixi71 – 766
    Helixi82 – 9312
    Turni94 – 963
    Beta strandi104 – 1085
    Helixi110 – 11910
    Helixi121 – 1266
    Beta strandi131 – 1333
    Helixi134 – 14411
    Helixi146 – 1494
    Helixi160 – 17718

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3TR8X-ray2.50A/B1-183[»]
    ProteinModelPortaliQ83C93.
    SMRiQ83C93. Positions 4-181.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini8 – 171164ExonucleaseUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the oligoribonuclease family.UniRule annotation
    Contains 1 exonuclease domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1949.
    HOGENOMiHOG000246596.
    KOiK13288.
    OMAiALEAYFH.
    OrthoDBiEOG6Z9B51.

    Family and domain databases

    Gene3Di3.30.420.10. 1 hit.
    HAMAPiMF_00045. Oligoribonuclease.
    InterProiIPR006055. Exonuclease.
    IPR013520. Exonuclease_RNaseT/DNA_pol3.
    IPR022894. Oligoribonuclease.
    IPR012337. RNaseH-like_dom.
    [Graphical view]
    PfamiPF00929. RNase_T. 1 hit.
    [Graphical view]
    SMARTiSM00479. EXOIII. 1 hit.
    [Graphical view]
    SUPFAMiSSF53098. SSF53098. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q83C93-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDFSDDNLIW LDLEMTGLDP ERDRIIEIAT IVTNSHLDIL AEGPAFAIHQ    50
    PDKLLTAMDN WNTSHHTASG LLERVKNSSV DEVEAETLTL AFLEKYVSAG 100
    KSPLCGNSVC QDRRFLSRYM PRLNQFFHYR HLDVTTLKIL AQRWAPQIAA 150
    AHIKESQHLA LQDIRDSIEE LRYYRAHLLN LSK 183
    Length:183
    Mass (Da):21,012
    Last modified:June 1, 2003 - v1
    Checksum:i5DE66FF76A607680
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016828 Genomic DNA. Translation: AAO90744.1.
    RefSeqiNP_820230.1. NC_002971.3.

    Genome annotation databases

    EnsemblBacteriaiAAO90744; AAO90744; CBU_1235.
    GeneIDi1209140.
    KEGGicbu:CBU_1235.
    PATRICi17931205. VBICoxBur82552_1227.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016828 Genomic DNA. Translation: AAO90744.1 .
    RefSeqi NP_820230.1. NC_002971.3.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3TR8 X-ray 2.50 A/B 1-183 [» ]
    ProteinModelPortali Q83C93.
    SMRi Q83C93. Positions 4-181.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 227377.CBU_1235.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAO90744 ; AAO90744 ; CBU_1235 .
    GeneIDi 1209140.
    KEGGi cbu:CBU_1235.
    PATRICi 17931205. VBICoxBur82552_1227.

    Phylogenomic databases

    eggNOGi COG1949.
    HOGENOMi HOG000246596.
    KOi K13288.
    OMAi ALEAYFH.
    OrthoDBi EOG6Z9B51.

    Enzyme and pathway databases

    BioCyci CBUR227377:GJ7S-1222-MONOMER.

    Family and domain databases

    Gene3Di 3.30.420.10. 1 hit.
    HAMAPi MF_00045. Oligoribonuclease.
    InterProi IPR006055. Exonuclease.
    IPR013520. Exonuclease_RNaseT/DNA_pol3.
    IPR022894. Oligoribonuclease.
    IPR012337. RNaseH-like_dom.
    [Graphical view ]
    Pfami PF00929. RNase_T. 1 hit.
    [Graphical view ]
    SMARTi SM00479. EXOIII. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53098. SSF53098. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RSA 493 / Nine Mile phase I.

    Entry informationi

    Entry nameiORN_COXBU
    AccessioniPrimary (citable) accession number: Q83C93
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 24, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Coxiella burnetii
      Coxiella burnetii (strain RSA 493): entries and gene names
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3