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Q83C93 (ORN_COXBU) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Oligoribonuclease

EC=3.1.-.-
Gene names
Name:orn
Ordered Locus Names:CBU_1235
OrganismCoxiella burnetii (strain RSA 493 / Nine Mile phase I) [Reference proteome] [HAMAP]
Taxonomic identifier227377 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella

Protein attributes

Sequence length183 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

3'-to-5' exoribonuclease specific for small oligoribonucleotides By similarity. HAMAP-Rule MF_00045

Subcellular location

Cytoplasm Potential HAMAP-Rule MF_00045.

Sequence similarities

Belongs to the oligoribonuclease family.

Contains 1 exonuclease domain.

Ontologies

Keywords
   Cellular componentCytoplasm
   Molecular functionExonuclease
Hydrolase
Nuclease
   Technical term3D-structure
Complete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionexoribonuclease activity, producing 5'-phosphomonoesters

Inferred from electronic annotation. Source: UniProtKB-HAMAP

nucleic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 183183Oligoribonuclease HAMAP-Rule MF_00045
PRO_0000111032

Regions

Domain8 – 171164Exonuclease

Sites

Active site1291 Potential

Secondary structure

............................... 183
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q83C93 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 5DE66FF76A607680

FASTA18321,012
        10         20         30         40         50         60 
MDFSDDNLIW LDLEMTGLDP ERDRIIEIAT IVTNSHLDIL AEGPAFAIHQ PDKLLTAMDN 

        70         80         90        100        110        120 
WNTSHHTASG LLERVKNSSV DEVEAETLTL AFLEKYVSAG KSPLCGNSVC QDRRFLSRYM 

       130        140        150        160        170        180 
PRLNQFFHYR HLDVTTLKIL AQRWAPQIAA AHIKESQHLA LQDIRDSIEE LRYYRAHLLN 


LSK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE016828 Genomic DNA. Translation: AAO90744.1.
RefSeqNP_820230.1. NC_002971.3.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3TR8X-ray2.50A/B1-183[»]
ProteinModelPortalQ83C93.
SMRQ83C93. Positions 4-181.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING227377.CBU_1235.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAO90744; AAO90744; CBU_1235.
GeneID1209140.
KEGGcbu:CBU_1235.
PATRIC17931205. VBICoxBur82552_1227.

Phylogenomic databases

eggNOGCOG1949.
HOGENOMHOG000246596.
KOK13288.
OMAAFFHYRN.
OrthoDBEOG6Z9B51.
ProtClustDBPRK05359.

Enzyme and pathway databases

BioCycCBUR227377:GJ7S-1222-MONOMER.

Family and domain databases

Gene3D3.30.420.10. 1 hit.
HAMAPMF_00045. Oligoribonuclease.
InterProIPR006055. Exonuclease.
IPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR022894. Oligoribonuclease.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamPF00929. RNase_T. 1 hit.
[Graphical view]
SMARTSM00479. EXOIII. 1 hit.
[Graphical view]
SUPFAMSSF53098. SSF53098. 1 hit.
ProtoNetSearch...

Entry information

Entry nameORN_COXBU
AccessionPrimary (citable) accession number: Q83C93
Entry history
Integrated into UniProtKB/Swiss-Prot: October 24, 2003
Last sequence update: June 1, 2003
Last modified: April 16, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Coxiella burnetii

Coxiella burnetii (strain RSA 493): entries and gene names