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Protein

Oligoribonuclease

Gene

orn

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

3'-to-5' exoribonuclease specific for small oligoribonucleotides.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei129 – 1291UniRule annotation

GO - Molecular functioni

  1. exoribonuclease activity, producing 5'-phosphomonoesters Source: UniProtKB-HAMAP
  2. nucleic acid binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Exonuclease, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-1222-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
OligoribonucleaseUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:ornUniRule annotation
Ordered Locus Names:CBU_1235
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
ProteomesiUP000002671: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 183183OligoribonucleasePRO_0000111032Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi227377.CBU_1235.

Structurei

Secondary structure

1
183
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi8 – 1811Combined sources
Turni20 – 223Combined sources
Beta strandi25 – 339Combined sources
Beta strandi39 – 424Combined sources
Helixi52 – 554Combined sources
Helixi60 – 689Combined sources
Helixi71 – 766Combined sources
Helixi82 – 9312Combined sources
Turni94 – 963Combined sources
Beta strandi104 – 1085Combined sources
Helixi110 – 11910Combined sources
Helixi121 – 1266Combined sources
Beta strandi131 – 1333Combined sources
Helixi134 – 14411Combined sources
Helixi146 – 1494Combined sources
Helixi160 – 17718Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3TR8X-ray2.50A/B1-183[»]
ProteinModelPortaliQ83C93.
SMRiQ83C93. Positions 4-181.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 171164ExonucleaseUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the oligoribonuclease family.UniRule annotation
Contains 1 exonuclease domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG1949.
HOGENOMiHOG000246596.
KOiK13288.
OMAiIWVDLEM.
OrthoDBiEOG6Z9B51.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
HAMAPiMF_00045. Oligoribonuclease.
InterProiIPR006055. Exonuclease.
IPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR022894. Oligoribonuclease.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00929. RNase_T. 1 hit.
[Graphical view]
SMARTiSM00479. EXOIII. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.

Sequencei

Sequence statusi: Complete.

Q83C93-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDFSDDNLIW LDLEMTGLDP ERDRIIEIAT IVTNSHLDIL AEGPAFAIHQ
60 70 80 90 100
PDKLLTAMDN WNTSHHTASG LLERVKNSSV DEVEAETLTL AFLEKYVSAG
110 120 130 140 150
KSPLCGNSVC QDRRFLSRYM PRLNQFFHYR HLDVTTLKIL AQRWAPQIAA
160 170 180
AHIKESQHLA LQDIRDSIEE LRYYRAHLLN LSK
Length:183
Mass (Da):21,012
Last modified:June 1, 2003 - v1
Checksum:i5DE66FF76A607680
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO90744.1.
RefSeqiNP_820230.1. NC_002971.3.

Genome annotation databases

EnsemblBacteriaiAAO90744; AAO90744; CBU_1235.
GeneIDi1209140.
KEGGicbu:CBU_1235.
PATRICi17931205. VBICoxBur82552_1227.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO90744.1.
RefSeqiNP_820230.1. NC_002971.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3TR8X-ray2.50A/B1-183[»]
ProteinModelPortaliQ83C93.
SMRiQ83C93. Positions 4-181.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi227377.CBU_1235.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO90744; AAO90744; CBU_1235.
GeneIDi1209140.
KEGGicbu:CBU_1235.
PATRICi17931205. VBICoxBur82552_1227.

Phylogenomic databases

eggNOGiCOG1949.
HOGENOMiHOG000246596.
KOiK13288.
OMAiIWVDLEM.
OrthoDBiEOG6Z9B51.

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-1222-MONOMER.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
HAMAPiMF_00045. Oligoribonuclease.
InterProiIPR006055. Exonuclease.
IPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR022894. Oligoribonuclease.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00929. RNase_T. 1 hit.
[Graphical view]
SMARTiSM00479. EXOIII. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RSA 493 / Nine Mile phase I.

Entry informationi

Entry nameiORN_COXBU
AccessioniPrimary (citable) accession number: Q83C93
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 24, 2003
Last sequence update: June 1, 2003
Last modified: January 7, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Coxiella burnetii
    Coxiella burnetii (strain RSA 493): entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.