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Protein

Oligoribonuclease

Gene

orn

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

3'-to-5' exoribonuclease specific for small oligoribonucleotides.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei129UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Exonuclease, Hydrolase, Nuclease

Names & Taxonomyi

Protein namesi
Recommended name:
OligoribonucleaseUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:ornUniRule annotation
Ordered Locus Names:CBU_1235
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
Proteomesi
  • UP000002671 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001110321 – 183OligoribonucleaseAdd BLAST183

Interactioni

Protein-protein interaction databases

STRINGi227377.CBU_1235.

Structurei

Secondary structure

1183
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi8 – 18Combined sources11
Turni20 – 22Combined sources3
Beta strandi25 – 33Combined sources9
Beta strandi39 – 42Combined sources4
Helixi52 – 55Combined sources4
Helixi60 – 68Combined sources9
Helixi71 – 76Combined sources6
Helixi82 – 93Combined sources12
Turni94 – 96Combined sources3
Beta strandi104 – 108Combined sources5
Helixi110 – 119Combined sources10
Helixi121 – 126Combined sources6
Beta strandi131 – 133Combined sources3
Helixi134 – 144Combined sources11
Helixi146 – 149Combined sources4
Helixi160 – 177Combined sources18

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3TR8X-ray2.50A/B1-183[»]
ProteinModelPortaliQ83C93.
SMRiQ83C93.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 171ExonucleaseUniRule annotationAdd BLAST164

Sequence similaritiesi

Belongs to the oligoribonuclease family.UniRule annotation
Contains 1 exonuclease domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108RBP. Bacteria.
COG1949. LUCA.
HOGENOMiHOG000246596.
KOiK13288.
OMAiAFFHYRN.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
HAMAPiMF_00045. Oligoribonuclease. 1 hit.
InterProiIPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR022894. Oligoribonuclease.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00929. RNase_T. 1 hit.
[Graphical view]
SMARTiSM00479. EXOIII. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.

Sequencei

Sequence statusi: Complete.

Q83C93-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDFSDDNLIW LDLEMTGLDP ERDRIIEIAT IVTNSHLDIL AEGPAFAIHQ
60 70 80 90 100
PDKLLTAMDN WNTSHHTASG LLERVKNSSV DEVEAETLTL AFLEKYVSAG
110 120 130 140 150
KSPLCGNSVC QDRRFLSRYM PRLNQFFHYR HLDVTTLKIL AQRWAPQIAA
160 170 180
AHIKESQHLA LQDIRDSIEE LRYYRAHLLN LSK
Length:183
Mass (Da):21,012
Last modified:June 1, 2003 - v1
Checksum:i5DE66FF76A607680
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO90744.1.
RefSeqiNP_820230.1. NC_002971.3.
WP_005770781.1. NZ_CDBG01000001.1.

Genome annotation databases

EnsemblBacteriaiAAO90744; AAO90744; CBU_1235.
GeneIDi1209140.
KEGGicbu:CBU_1235.
PATRICi17931205. VBICoxBur82552_1227.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO90744.1.
RefSeqiNP_820230.1. NC_002971.3.
WP_005770781.1. NZ_CDBG01000001.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3TR8X-ray2.50A/B1-183[»]
ProteinModelPortaliQ83C93.
SMRiQ83C93.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi227377.CBU_1235.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO90744; AAO90744; CBU_1235.
GeneIDi1209140.
KEGGicbu:CBU_1235.
PATRICi17931205. VBICoxBur82552_1227.

Phylogenomic databases

eggNOGiENOG4108RBP. Bacteria.
COG1949. LUCA.
HOGENOMiHOG000246596.
KOiK13288.
OMAiAFFHYRN.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
HAMAPiMF_00045. Oligoribonuclease. 1 hit.
InterProiIPR013520. Exonuclease_RNaseT/DNA_pol3.
IPR022894. Oligoribonuclease.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00929. RNase_T. 1 hit.
[Graphical view]
SMARTiSM00479. EXOIII. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiORN_COXBU
AccessioniPrimary (citable) accession number: Q83C93
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 24, 2003
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Coxiella burnetii
    Coxiella burnetii (strain RSA 493): entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.