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Protein

Oligoribonuclease

Gene

orn

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

3'-to-5' exoribonuclease specific for small oligoribonucleotides.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei129UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionExonuclease, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciCBUR227377:G1G0B-1219-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
OligoribonucleaseUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:ornUniRule annotation
Ordered Locus Names:CBU_1235
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
Proteomesi
  • UP000002671 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001110321 – 183OligoribonucleaseAdd BLAST183

Proteomic databases

PRIDEiQ83C93

Interactioni

Protein-protein interaction databases

STRINGi227377.CBU_1235

Structurei

Secondary structure

1183
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi8 – 18Combined sources11
Turni20 – 22Combined sources3
Beta strandi25 – 33Combined sources9
Beta strandi39 – 42Combined sources4
Helixi52 – 55Combined sources4
Helixi60 – 68Combined sources9
Helixi71 – 76Combined sources6
Helixi82 – 93Combined sources12
Turni94 – 96Combined sources3
Beta strandi104 – 108Combined sources5
Helixi110 – 119Combined sources10
Helixi121 – 126Combined sources6
Beta strandi131 – 133Combined sources3
Helixi134 – 144Combined sources11
Helixi146 – 149Combined sources4
Helixi160 – 177Combined sources18

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3TR8X-ray2.50A/B1-183[»]
ProteinModelPortaliQ83C93
SMRiQ83C93
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 171ExonucleaseUniRule annotationAdd BLAST164

Sequence similaritiesi

Belongs to the oligoribonuclease family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108RBP Bacteria
COG1949 LUCA
HOGENOMiHOG000246596
KOiK13288
OMAiAFFHYRN

Family and domain databases

CDDicd06135 Orn, 1 hit
Gene3Di3.30.420.10, 1 hit
HAMAPiMF_00045 Oligoribonuclease, 1 hit
InterProiView protein in InterPro
IPR013520 Exonuclease_RNaseT/DNA_pol3
IPR022894 Oligoribonuclease
IPR012337 RNaseH-like_sf
IPR036397 RNaseH_sf
PfamiView protein in Pfam
PF00929 RNase_T, 1 hit
SMARTiView protein in SMART
SM00479 EXOIII, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit

Sequencei

Sequence statusi: Complete.

Q83C93-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDFSDDNLIW LDLEMTGLDP ERDRIIEIAT IVTNSHLDIL AEGPAFAIHQ
60 70 80 90 100
PDKLLTAMDN WNTSHHTASG LLERVKNSSV DEVEAETLTL AFLEKYVSAG
110 120 130 140 150
KSPLCGNSVC QDRRFLSRYM PRLNQFFHYR HLDVTTLKIL AQRWAPQIAA
160 170 180
AHIKESQHLA LQDIRDSIEE LRYYRAHLLN LSK
Length:183
Mass (Da):21,012
Last modified:June 1, 2003 - v1
Checksum:i5DE66FF76A607680
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA Translation: AAO90744.1
RefSeqiNP_820230.1, NC_002971.3
WP_005770781.1, NZ_LM994641.1

Genome annotation databases

EnsemblBacteriaiAAO90744; AAO90744; CBU_1235
GeneIDi1209140
31483935
KEGGicbu:CBU_1235
PATRICifig|227377.7.peg.1227

Similar proteinsi

Entry informationi

Entry nameiORN_COXBU
AccessioniPrimary (citable) accession number: Q83C93
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 24, 2003
Last sequence update: June 1, 2003
Last modified: May 23, 2018
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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