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Q83BB0

- RIMK_COXBU

UniProt

Q83BB0 - RIMK_COXBU

Protein

Probable alpha-L-glutamate ligase

Gene

rimK

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 69 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei141 – 1411ATPUniRule annotation
    Binding sitei187 – 1871ATPUniRule annotation
    Metal bindingi248 – 2481Magnesium or manganese 1UniRule annotation
    Metal bindingi260 – 2601Magnesium or manganese 1UniRule annotation
    Metal bindingi260 – 2601Magnesium or manganese 2UniRule annotation
    Metal bindingi262 – 2621Magnesium or manganese 2UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi178 – 1792ATPUniRule annotation
    Nucleotide bindingi211 – 2133ATPUniRule annotation

    GO - Molecular functioni

    1. acid-amino acid ligase activity Source: UniProtKB-HAMAP
    2. ATP binding Source: UniProtKB-HAMAP
    3. magnesium ion binding Source: UniProtKB-HAMAP
    4. manganese ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. cellular protein modification process Source: InterPro
    2. translation Source: UniProtKB-KW

    Keywords - Molecular functioni

    Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciCBUR227377:GJ7S-1581-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable alpha-L-glutamate ligaseUniRule annotation (EC:6.3.2.-UniRule annotation)
    Gene namesi
    Name:rimKUniRule annotation
    Ordered Locus Names:CBU_1602
    OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
    Taxonomic identifieri227377 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
    ProteomesiUP000002671: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 301301Probable alpha-L-glutamate ligasePRO_0000205452Add
    BLAST

    Proteomic databases

    PRIDEiQ83BB0.

    Interactioni

    Protein-protein interaction databases

    STRINGi227377.CBU_1602.

    Structurei

    3D structure databases

    ProteinModelPortaliQ83BB0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini104 – 287184ATP-graspUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RimK family.UniRule annotation
    Contains 1 ATP-grasp domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0189.
    HOGENOMiHOG000293092.
    KOiK05844.
    OMAiCREPRLY.
    OrthoDBiEOG6DZDX8.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    3.40.50.20. 1 hit.
    HAMAPiMF_01552. RimK.
    InterProiIPR011761. ATP-grasp.
    IPR013651. ATP-grasp_RimK-type.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR016185. PreATP-grasp_dom.
    IPR023533. Ribosomal_S6_modifier_RimK.
    IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
    [Graphical view]
    PfamiPF08443. RimK. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00768. rimK_fam. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q83BB0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKIAILSTKQ ELSSTQRLKE AALARGHKVK IINTLRCYMS LSQEKPTIHY    50
    MGKELARYDA VIPRIGASIT FYGTAVVRQF EMMGTFCLNS SMSITRSRDK 100
    FRSLQFLSRK GIDLPITGFA HSPDDIEDLI QMVGGTPLII KLIEGTQGIG 150
    VVLAETKKAA ESVIQAFLGL KVNILIQEFI GETQGRDIRC FVIGNKVVAT 200
    MQREARPGDF RSNVHRGGTT KLIKITPQER EISINAAKAL GLNVAGVDLL 250
    RSKRGPLVLE VNSSPGLEGI ENITKKDIAG MIIEFIEKNA KPIKAYSRYQ 300
    G 301
    Length:301
    Mass (Da):33,192
    Last modified:June 1, 2003 - v1
    Checksum:i3D2FFF25F2877511
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016828 Genomic DNA. Translation: AAO91099.1.
    RefSeqiNP_820585.1. NC_002971.3.

    Genome annotation databases

    EnsemblBacteriaiAAO91099; AAO91099; CBU_1602.
    GeneIDi1209513.
    KEGGicbu:CBU_1602.
    PATRICi17931967. VBICoxBur82552_1602.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016828 Genomic DNA. Translation: AAO91099.1 .
    RefSeqi NP_820585.1. NC_002971.3.

    3D structure databases

    ProteinModelPortali Q83BB0.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 227377.CBU_1602.

    Proteomic databases

    PRIDEi Q83BB0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAO91099 ; AAO91099 ; CBU_1602 .
    GeneIDi 1209513.
    KEGGi cbu:CBU_1602.
    PATRICi 17931967. VBICoxBur82552_1602.

    Phylogenomic databases

    eggNOGi COG0189.
    HOGENOMi HOG000293092.
    KOi K05844.
    OMAi CREPRLY.
    OrthoDBi EOG6DZDX8.

    Enzyme and pathway databases

    BioCyci CBUR227377:GJ7S-1581-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    3.40.50.20. 1 hit.
    HAMAPi MF_01552. RimK.
    InterProi IPR011761. ATP-grasp.
    IPR013651. ATP-grasp_RimK-type.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR016185. PreATP-grasp_dom.
    IPR023533. Ribosomal_S6_modifier_RimK.
    IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
    [Graphical view ]
    Pfami PF08443. RimK. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00768. rimK_fam. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RSA 493 / Nine Mile phase I.

    Entry informationi

    Entry nameiRIMK_COXBU
    AccessioniPrimary (citable) accession number: Q83BB0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 20, 2005
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 69 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Coxiella burnetii
      Coxiella burnetii (strain RSA 493): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3