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Protein

LPS-assembly protein LptD

Gene

lptD

Organism
Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.UniRule annotation

GO - Biological processi

  1. Gram-negative-bacterium-type cell outer membrane assembly Source: UniProtKB-HAMAP
  2. lipopolysaccharide transport Source: InterPro
  3. response to organic substance Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-1952-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
LPS-assembly protein LptDUniRule annotation
Gene namesi
Name:lptDUniRule annotation
Synonyms:imp, ostA
Ordered Locus Names:CBU_1978
OrganismiCoxiella burnetii (strain RSA 493 / Nine Mile phase I)
Taxonomic identifieri227377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaLegionellalesCoxiellaceaeCoxiella
ProteomesiUP000002671 Componenti: Chromosome

Subcellular locationi

Cell outer membrane UniRule annotation

GO - Cellular componenti

  1. cell outer membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525UniRule annotationAdd
BLAST
Chaini26 – 870845LPS-assembly protein LptDPRO_0000281600Add
BLAST

Interactioni

Subunit structurei

Component of the lipopolysaccharide transport and assembly complex. Interacts with LptE and LptA.UniRule annotation

Protein-protein interaction databases

STRINGi227377.CBU_1978.

Family & Domainsi

Sequence similaritiesi

Belongs to the LptD family.UniRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG1452.
HOGENOMiHOG000027335.
KOiK04744.
OMAiDYSHLDW.
OrthoDBiEOG6SZ1CP.

Family and domain databases

HAMAPiMF_01411. LPS_assembly_LptD.
InterProiIPR020889. LipoPS_assembly_LptD.
IPR007543. OstA_C.
[Graphical view]
PfamiPF04453. OstA_C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q83AC6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQGKSFIFY CLVLLLCGFQ QLSSAVTASI AKAIKTTDRK QRVSETLPTG
60 70 80 90 100
LSYRRFYQHI AHLLGWVPAP DLVCRGYFKE PLILTEHPHP GPATKEPAIV
110 120 130 140 150
TAKGPSMVTA QGVSILRKDV VVTQPGRIVE ADKAYIYRDS KTGHVTKIIL
160 170 180 190 200
IGHVRLHEAD KRIVADKGTL TLYPKTAILM NAAYHIYNGE PYFYKFKYPF
210 220 230 240 250
DAWGIAKHAV RDASNVITLR HATYSTCKPT APAWSMSATT LVLNRNTHRG
260 270 280 290 300
EAYNMLLHIG RVPIFYFPYF NFPIDNYRKT GFLIPYAGHS SSSGWFFALP
310 320 330 340 350
FYWNMAPNYD LTLTPEFMSE RGLNLQSLFR FLSTKSSGTI YLNYLPNDKV
360 370 380 390 400
FQQFRETTLS KFPPSVLAEH PVFIPYVDKL KKMKNQRAFF SMNETTLFNS
410 420 430 440 450
EWSSRVILNY VTDPYFFQDL GGQLGGSSLA NQLLNQIDLQ YNGLHWQFMG
460 470 480 490 500
MLQAYQTLHL ISQWTTPALD QYSRLPDFNI VGYYPDIARH VDFNFNAEAV
510 520 530 540 550
NFDYRSDFVP DKPRGQRFHM RPGISFPFYF ASGYIIPQLW ADATAYNITH
560 570 580 590 600
FQPGQAHTSS RLLPIFDIDS GLYFDRNFHL GHRSFIQTLE PRFFYLYVPY
610 620 630 640 650
QNQDRFPNFD TVLLPFSFEQ LFALNQFTGN DRLQNANQAS FALTSRVLDA
660 670 680 690 700
QNGSPILTAN VGFIYYLENQ RVCLTPGCTP SNYHYSPIIG ELTFYPFPYW
710 720 730 740 750
SFTGSLAWDP NLGQTNNTSV ELAYNNGGKK ADIRYLFVHG NEDSIVTPTT
760 770 780 790 800
LIVPGNAYSQ NTNHVISSGA WPLLKKWNAV GYWDYNITER RTDVYSIGVQ
810 820 830 840 850
YNTCCWALSF SIRRTYAGLK VDPNGALQRQ YDTAYGFELQ LKGLGNLGTA
860 870
PISTVTVLDA MNNGVSNDVR
Length:870
Mass (Da):99,077
Last modified:May 31, 2003 - v1
Checksum:i2FD4AC39F0C2DAF8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO91467.1.
RefSeqiNP_820953.1. NC_002971.3.

Genome annotation databases

EnsemblBacteriaiAAO91467; AAO91467; CBU_1978.
GeneIDi1209891.
KEGGicbu:CBU_1978.
PATRICi17932699. VBICoxBur82552_1966.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016828 Genomic DNA. Translation: AAO91467.1.
RefSeqiNP_820953.1. NC_002971.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi227377.CBU_1978.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO91467; AAO91467; CBU_1978.
GeneIDi1209891.
KEGGicbu:CBU_1978.
PATRICi17932699. VBICoxBur82552_1966.

Phylogenomic databases

eggNOGiCOG1452.
HOGENOMiHOG000027335.
KOiK04744.
OMAiDYSHLDW.
OrthoDBiEOG6SZ1CP.

Enzyme and pathway databases

BioCyciCBUR227377:GJ7S-1952-MONOMER.

Family and domain databases

HAMAPiMF_01411. LPS_assembly_LptD.
InterProiIPR020889. LipoPS_assembly_LptD.
IPR007543. OstA_C.
[Graphical view]
PfamiPF04453. OstA_C. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RSA 493 / Nine Mile phase I.

Entry informationi

Entry nameiLPTD_COXBU
AccessioniPrimary (citable) accession number: Q83AC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 19, 2007
Last sequence update: May 31, 2003
Last modified: March 3, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Coxiella burnetii
    Coxiella burnetii (strain RSA 493): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.