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Q83928

- CAPSD_OCSVU

UniProt

Q83928 - CAPSD_OCSVU

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Protein

Capsid protein

Gene

ORF2

Organism
Oat chlorotic stunt virus (isolate United Kingdom) (OCSV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28-34 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. structural molecule activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
p48
Gene namesi
ORF Names:ORF2
OrganismiOat chlorotic stunt virus (isolate United Kingdom) (OCSV)
Taxonomic identifieri652110 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeAvenavirus
Virus hostiAvena sativa (Oat) [TaxID: 4498]
ProteomesiUP000000573: Genome

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 454454Capsid proteinPRO_0000399480Add
BLAST

Interactioni

Subunit structurei

Homomultimer.Curated

Structurei

3D structure databases

ProteinModelPortaliQ83928.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.

Sequencei

Sequence statusi: Complete.

Q83928-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTLNLRKVPA YLPGKVDGAL TNLVHAAVDH VVPGLGKAEK AAAVYNIKQV
60 70 80 90 100
VKKLGTYTEQ GVKKIAKKTL GELGYLNYTP SSHLGMAITG RGTKQINMSR
110 120 130 140 150
STNAGGFALG GTTAAPVSIS RNINRRSKPS IKMMGDAVVI SHSEMLGAIN
160 170 180 190 200
SGTPSSNVTA FRCTGYRANP GMSTIFPWLS ATAVNYEKYK FRRLSFTLVP
210 220 230 240 250
LVSTNYSGRI GVGFDYDSSD LVPGNRQEFY ALSNHCENMP WQESTVEIKC
260 270 280 290 300
DNAYRFTGTH VAADNKLIDL GQVVVMSDSV SNGGTISAAL PLFDLIVNYT
310 320 330 340 350
VELIEPQQAL FSSQLYSGST TFTSGIPLGT GADTTTVVGP TVVNSTTVTN
360 370 380 390 400
CVVTFKLPAG VFEVSYFIAW STGTAAVVPT VPTTGAGSKL SNTSTGSNSY
410 420 430 440 450
GVCFINSPVE CDLLLTATVL LIIPTLPSST CVFHAPARRC TTPMCHRLLT

SLAG
Length:454
Mass (Da):48,116
Last modified:November 1, 1996 - v1
Checksum:i22AF3868336401C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83964 Genomic RNA. Translation: CAA58798.1.
RefSeqiNP_619753.1. NC_003633.1.

Genome annotation databases

GeneIDi1732852.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83964 Genomic RNA. Translation: CAA58798.1 .
RefSeqi NP_619753.1. NC_003633.1.

3D structure databases

ProteinModelPortali Q83928.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1732852.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
ProtoNeti Search...

Publicationsi

  1. "The nucleotide sequence and proposed genome organization of oat chlorotic stunt virus, a new soil-borne virus of cereals."
    Boonham N., Henry C.M., Wood K.R.
    J. Gen. Virol. 76:2025-2034(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_OCSVU
AccessioniPrimary (citable) accession number: Q83928
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: November 1, 1996
Last modified: October 1, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3