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Q83928

- CAPSD_OCSVU

UniProt

Q83928 - CAPSD_OCSVU

Protein

Capsid protein

Gene

ORF2

Organism
Oat chlorotic stunt virus (isolate United Kingdom) (OCSV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28-34 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    p48
    Gene namesi
    ORF Names:ORF2
    OrganismiOat chlorotic stunt virus (isolate United Kingdom) (OCSV)
    Taxonomic identifieri652110 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeAvenavirus
    Virus hostiAvena sativa (Oat) [TaxID: 4498]
    ProteomesiUP000000573: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 454454Capsid proteinPRO_0000399480Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    3D structure databases

    ProteinModelPortaliQ83928.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.

    Sequencei

    Sequence statusi: Complete.

    Q83928-1 [UniParc]FASTAAdd to Basket

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    MTLNLRKVPA YLPGKVDGAL TNLVHAAVDH VVPGLGKAEK AAAVYNIKQV    50
    VKKLGTYTEQ GVKKIAKKTL GELGYLNYTP SSHLGMAITG RGTKQINMSR 100
    STNAGGFALG GTTAAPVSIS RNINRRSKPS IKMMGDAVVI SHSEMLGAIN 150
    SGTPSSNVTA FRCTGYRANP GMSTIFPWLS ATAVNYEKYK FRRLSFTLVP 200
    LVSTNYSGRI GVGFDYDSSD LVPGNRQEFY ALSNHCENMP WQESTVEIKC 250
    DNAYRFTGTH VAADNKLIDL GQVVVMSDSV SNGGTISAAL PLFDLIVNYT 300
    VELIEPQQAL FSSQLYSGST TFTSGIPLGT GADTTTVVGP TVVNSTTVTN 350
    CVVTFKLPAG VFEVSYFIAW STGTAAVVPT VPTTGAGSKL SNTSTGSNSY 400
    GVCFINSPVE CDLLLTATVL LIIPTLPSST CVFHAPARRC TTPMCHRLLT 450
    SLAG 454
    Length:454
    Mass (Da):48,116
    Last modified:November 1, 1996 - v1
    Checksum:i22AF3868336401C0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X83964 Genomic RNA. Translation: CAA58798.1.
    RefSeqiNP_619753.1. NC_003633.1.

    Genome annotation databases

    GeneIDi1732852.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X83964 Genomic RNA. Translation: CAA58798.1 .
    RefSeqi NP_619753.1. NC_003633.1.

    3D structure databases

    ProteinModelPortali Q83928.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 1732852.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    ProtoNeti Search...

    Publicationsi

    1. "The nucleotide sequence and proposed genome organization of oat chlorotic stunt virus, a new soil-borne virus of cereals."
      Boonham N., Henry C.M., Wood K.R.
      J. Gen. Virol. 76:2025-2034(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_OCSVU
    AccessioniPrimary (citable) accession number: Q83928
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 5, 2010
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3