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Q83928 (CAPSD_OCSVU) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
p48
Gene names
ORF Names:ORF2
OrganismOat chlorotic stunt virus (isolate United Kingdom) (OCSV) [Reference proteome]
Taxonomic identifier652110 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeAvenavirus
Virus hostAvena sativa (Oat) [TaxID: 4498]

Protein attributes

Sequence length454 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28-34 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Keywords
   Cellular componentCapsid protein
T=3 icosahedral capsid protein
Virion
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentT=3 icosahedral viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 454454Capsid protein
PRO_0000399480

Sequences

Sequence LengthMass (Da)Tools
Q83928 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 22AF3868336401C0

FASTA45448,116
        10         20         30         40         50         60 
MTLNLRKVPA YLPGKVDGAL TNLVHAAVDH VVPGLGKAEK AAAVYNIKQV VKKLGTYTEQ 

        70         80         90        100        110        120 
GVKKIAKKTL GELGYLNYTP SSHLGMAITG RGTKQINMSR STNAGGFALG GTTAAPVSIS 

       130        140        150        160        170        180 
RNINRRSKPS IKMMGDAVVI SHSEMLGAIN SGTPSSNVTA FRCTGYRANP GMSTIFPWLS 

       190        200        210        220        230        240 
ATAVNYEKYK FRRLSFTLVP LVSTNYSGRI GVGFDYDSSD LVPGNRQEFY ALSNHCENMP 

       250        260        270        280        290        300 
WQESTVEIKC DNAYRFTGTH VAADNKLIDL GQVVVMSDSV SNGGTISAAL PLFDLIVNYT 

       310        320        330        340        350        360 
VELIEPQQAL FSSQLYSGST TFTSGIPLGT GADTTTVVGP TVVNSTTVTN CVVTFKLPAG 

       370        380        390        400        410        420 
VFEVSYFIAW STGTAAVVPT VPTTGAGSKL SNTSTGSNSY GVCFINSPVE CDLLLTATVL 

       430        440        450 
LIIPTLPSST CVFHAPARRC TTPMCHRLLT SLAG 

« Hide

References

[1]"The nucleotide sequence and proposed genome organization of oat chlorotic stunt virus, a new soil-borne virus of cereals."
Boonham N., Henry C.M., Wood K.R.
J. Gen. Virol. 76:2025-2034(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X83964 Genomic RNA. Translation: CAA58798.1.
RefSeqNP_619753.1. NC_003633.1.

3D structure databases

ProteinModelPortalQ83928.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1732852.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
ProtoNetSearch...

Entry information

Entry nameCAPSD_OCSVU
AccessionPrimary (citable) accession number: Q83928
Entry history
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families