SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q83928

- CAPSD_OCSVU

UniProt

Q83928 - CAPSD_OCSVU

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Capsid protein

Gene
ORF2
Organism
Oat chlorotic stunt virus (isolate United Kingdom) (OCSV)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 28-34 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. structural molecule activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
p48
Gene namesi
ORF Names:ORF2
OrganismiOat chlorotic stunt virus (isolate United Kingdom) (OCSV)
Taxonomic identifieri652110 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeAvenavirus
Virus hostiAvena sativa (Oat) [TaxID: 4498]
ProteomesiUP000000573: Genome

Subcellular locationi

Virion Reviewed prediction

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 454454Capsid proteinPRO_0000399480Add
BLAST

Interactioni

Subunit structurei

Homomultimer Reviewed prediction.

Structurei

3D structure databases

ProteinModelPortaliQ83928.

Family & Domainsi

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.

Sequencei

Sequence statusi: Complete.

Q83928-1 [UniParc]FASTAAdd to Basket

« Hide

MTLNLRKVPA YLPGKVDGAL TNLVHAAVDH VVPGLGKAEK AAAVYNIKQV    50
VKKLGTYTEQ GVKKIAKKTL GELGYLNYTP SSHLGMAITG RGTKQINMSR 100
STNAGGFALG GTTAAPVSIS RNINRRSKPS IKMMGDAVVI SHSEMLGAIN 150
SGTPSSNVTA FRCTGYRANP GMSTIFPWLS ATAVNYEKYK FRRLSFTLVP 200
LVSTNYSGRI GVGFDYDSSD LVPGNRQEFY ALSNHCENMP WQESTVEIKC 250
DNAYRFTGTH VAADNKLIDL GQVVVMSDSV SNGGTISAAL PLFDLIVNYT 300
VELIEPQQAL FSSQLYSGST TFTSGIPLGT GADTTTVVGP TVVNSTTVTN 350
CVVTFKLPAG VFEVSYFIAW STGTAAVVPT VPTTGAGSKL SNTSTGSNSY 400
GVCFINSPVE CDLLLTATVL LIIPTLPSST CVFHAPARRC TTPMCHRLLT 450
SLAG 454
Length:454
Mass (Da):48,116
Last modified:November 1, 1996 - v1
Checksum:i22AF3868336401C0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X83964 Genomic RNA. Translation: CAA58798.1.
RefSeqiNP_619753.1. NC_003633.1.

Genome annotation databases

GeneIDi1732852.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X83964 Genomic RNA. Translation: CAA58798.1 .
RefSeqi NP_619753.1. NC_003633.1.

3D structure databases

ProteinModelPortali Q83928.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 1732852.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
ProtoNeti Search...

Publicationsi

  1. "The nucleotide sequence and proposed genome organization of oat chlorotic stunt virus, a new soil-borne virus of cereals."
    Boonham N., Henry C.M., Wood K.R.
    J. Gen. Virol. 76:2025-2034(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_OCSVU
AccessioniPrimary (citable) accession number: Q83928
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3