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Protein

Capsid protein

Gene

CP

Organism
Tomato mosaic virus (strain Korean) (ToMV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
Name:CP
OrganismiTomato mosaic virus (strain Korean) (ToMV)
Taxonomic identifieri138313 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostiAntirrhinum majus (Garden snapdragon) [TaxID: 4151]
Capsicum (peppers) [TaxID: 4071]
Delphinium [TaxID: 46246]
Petunia [TaxID: 4101]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Tagetes (marigolds) [TaxID: 13707]

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by hostBy similarity
ChainiPRO_00001449492 – 157Capsid proteinAdd BLAST156

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserine; by hostBy similarity1

Keywords - PTMi

Acetylation

Structurei

3D structure databases

ProteinModelPortaliQ83482.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the virgaviridae capsid protein family.Curated

Family and domain databases

Gene3Di1.20.120.70. 1 hit.
InterProiView protein in InterPro
IPR001337. TMV-like_coat.
IPR036417. TMV-like_coat_sf.
PfamiView protein in Pfam
PF00721. TMV_coat. 1 hit.
SUPFAMiSSF47195. SSF47195. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q83482-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYTVSSANQ LVYLGSVWAD PLELQNLCTS ALGNQFQTQQ ARTTVQQQFS
60 70 80 90 100
DVWKTIPTAT VRFPATGFKV FRYNAVLDSL VSALLGAFDT RNRIIEVENP
110 120 130 140 150
QNPTTAETLD ATRRVDDATV AIRASISNLM NELVRGTGMY NQALFESASG

LTWATTP
Length:157
Mass (Da):17,257
Last modified:January 23, 2007 - v3
Checksum:i713B64EA4F572365
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L35074 Genomic RNA. Translation: AAA46589.1.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_TOMKO
AccessioniPrimary (citable) accession number: Q83482
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: January 23, 2007
Last modified: October 25, 2017
This is version 57 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families