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Protein

Gag polyprotein

Gene
N/A
Organism
Lymphoproliferative disease virus
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processHost-virus interaction, Viral budding, Viral budding via the host ESCRT complexesSAAS annotation, Viral release from host cell
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
OrganismiLymphoproliferative disease virusImported
Taxonomic identifieri11961 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeAlpharetrovirusunclassified Alpharetrovirus

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

VirionSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ83009
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini288 – 649PEROXIDASE_4InterPro annotationAdd BLAST362
Domaini632 – 647CCHC-typeInterPro annotationAdd BLAST16
Domaini656 – 672CCHC-typeInterPro annotationAdd BLAST17

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili119 – 139Sequence analysisAdd BLAST21
Coiled coili323 – 346Sequence analysisAdd BLAST24

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Family and domain databases

Gene3Di1.10.1200.30, 1 hit
1.10.150.90, 1 hit
1.10.375.10, 1 hit
InterProiView protein in InterPro
IPR004028 Gag_M
IPR000721 Gag_p24
IPR002016 Haem_peroxidase_pln/fun/bac
IPR012344 Matrix_HIV/RSV_N
IPR008916 Retrov_capsid_C
IPR008919 Retrov_capsid_N
IPR010999 Retrovr_matrix
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00607 Gag_p24, 1 hit
PF02813 Retro_M, 1 hit
PF00098 zf-CCHC, 2 hits
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002871 Gag_M, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 2 hits
SUPFAMiSSF47836 SSF47836, 1 hit
SSF47943 SSF47943, 1 hit
SSF57756 SSF57756, 1 hit
PROSITEiView protein in PROSITE
PS50873 PEROXIDASE_4, 1 hit
PS50158 ZF_CCHC, 2 hits

Sequencei

Sequence statusi: Complete.

Q83009-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDTVKRVLKT LAQDQRTSVR SKDVVSCIER LIAEGAIKRP SDIFARDIWP
60 70 80 90 100
HCTATLTQRA MTGSAGELRT WGTIMRILQT AKEEKQAWKE ARAALGLSSS
110 120 130 140 150
VASQTFAEAA SLIDTAEAMN DLSQEGAETE RNVTEIRESS QNDTVDSESD
160 170 180 190 200
PPAALPVRPL RDSQDWRGGS GAGESYTASS GSGAESSMET FREVPTAPPP
210 220 230 240 250
PVMGPGQEPP PNYPWEELRA AFERMGTGGR TTQGHQDSLK NSTRISGGSQ
260 270 280 290 300
QQQEMAAVKP KKEVSWGQPL KTSDASMGDG SSDTESGDDE DLLDWLPGKP
310 320 330 340 350
IKKSRRRDYK QEMGGAEKSP KFEQEGEELL ELLKRVKQEV ERQSAAIQGS
360 370 380 390 400
RQISRATKIT PIPLTDWGLV ATECKLGGLK LEVPLPRVAP VRQMAGGQIE
410 420 430 440 450
WTPLDPKMVK QLKEAIQEEG TTGPLASVLL DQVHQIALTP SDLRQLARIV
460 470 480 490 500
LSPVMAALWK SEWTERLQAR VTTATHDRRD PLHGVTVAVL KGSDPAMATP
510 520 530 540 550
QLQAARMRGR EIQASCQASV SICGGRTVGK RTDPWTKVTQ GLGEPFLSFA
560 570 580 590 600
ERLLNAYEKS QLPEAAKNAV FRDCVKQQGN MLTQQYMLGA PSTENTAELV
610 620 630 640 650
KYLLKRENEG AAQGNAAAIV AALKEARAGA NCFKCGAVGH MRRDCPSLNK
660 670 680 690 700
RDGGARCWSC GGAGHLARDC RKRRGENARR GALAPMQGNG GAAAGRRGPA
710 720
APRFVHPRET TATDGVPRSP WSSA
Length:724
Mass (Da):78,423
Last modified:November 1, 1996 - v1
Checksum:i0C2DDEFD95D481DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U09568 Genomic DNA Translation: AAA62193.1

Similar proteinsi

Entry informationi

Entry nameiQ83009_9RETR
AccessioniPrimary (citable) accession number: Q83009
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: April 25, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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