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Protein

Gag polyprotein

Gene
N/A
Organism
Lymphoproliferative disease virus
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Host-virus interaction, Viral budding, Viral budding via the host ESCRT complexesSAAS annotation, Virus exit from host cell

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
OrganismiLymphoproliferative disease virusImported
Taxonomic identifieri11961 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeAlpharetrovirusunclassified Alpharetrovirus

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinUniRule annotation, Virion

Structurei

3D structure databases

ProteinModelPortaliQ83009.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini288 – 649362PEROXIDASE_4InterPro annotationAdd
BLAST
Domaini632 – 64716CCHC-typeInterPro annotationAdd
BLAST
Domaini656 – 67217CCHC-typeInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili323 – 34624Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerUniRule annotationSAAS annotation

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR004028. Gag_M.
IPR000721. Gag_p24.
IPR002016. Haem_peroxidase_pln/fun/bac.
IPR012344. Matrix_HIV/RSV.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF02813. Retro_M. 1 hit.
PF00098. zf-CCHC. 2 hits.
[Graphical view]
ProDomiPD002871. Gag_M. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50873. PEROXIDASE_4. 1 hit.
PS50158. ZF_CCHC. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q83009-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDTVKRVLKT LAQDQRTSVR SKDVVSCIER LIAEGAIKRP SDIFARDIWP
60 70 80 90 100
HCTATLTQRA MTGSAGELRT WGTIMRILQT AKEEKQAWKE ARAALGLSSS
110 120 130 140 150
VASQTFAEAA SLIDTAEAMN DLSQEGAETE RNVTEIRESS QNDTVDSESD
160 170 180 190 200
PPAALPVRPL RDSQDWRGGS GAGESYTASS GSGAESSMET FREVPTAPPP
210 220 230 240 250
PVMGPGQEPP PNYPWEELRA AFERMGTGGR TTQGHQDSLK NSTRISGGSQ
260 270 280 290 300
QQQEMAAVKP KKEVSWGQPL KTSDASMGDG SSDTESGDDE DLLDWLPGKP
310 320 330 340 350
IKKSRRRDYK QEMGGAEKSP KFEQEGEELL ELLKRVKQEV ERQSAAIQGS
360 370 380 390 400
RQISRATKIT PIPLTDWGLV ATECKLGGLK LEVPLPRVAP VRQMAGGQIE
410 420 430 440 450
WTPLDPKMVK QLKEAIQEEG TTGPLASVLL DQVHQIALTP SDLRQLARIV
460 470 480 490 500
LSPVMAALWK SEWTERLQAR VTTATHDRRD PLHGVTVAVL KGSDPAMATP
510 520 530 540 550
QLQAARMRGR EIQASCQASV SICGGRTVGK RTDPWTKVTQ GLGEPFLSFA
560 570 580 590 600
ERLLNAYEKS QLPEAAKNAV FRDCVKQQGN MLTQQYMLGA PSTENTAELV
610 620 630 640 650
KYLLKRENEG AAQGNAAAIV AALKEARAGA NCFKCGAVGH MRRDCPSLNK
660 670 680 690 700
RDGGARCWSC GGAGHLARDC RKRRGENARR GALAPMQGNG GAAAGRRGPA
710 720
APRFVHPRET TATDGVPRSP WSSA
Length:724
Mass (Da):78,423
Last modified:November 1, 1996 - v1
Checksum:i0C2DDEFD95D481DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U09568 Genomic DNA. Translation: AAA62193.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U09568 Genomic DNA. Translation: AAA62193.1.

3D structure databases

ProteinModelPortaliQ83009.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR004028. Gag_M.
IPR000721. Gag_p24.
IPR002016. Haem_peroxidase_pln/fun/bac.
IPR012344. Matrix_HIV/RSV.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF02813. Retro_M. 1 hit.
PF00098. zf-CCHC. 2 hits.
[Graphical view]
ProDomiPD002871. Gag_M. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50873. PEROXIDASE_4. 1 hit.
PS50158. ZF_CCHC. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome organization of a biologically active molecular clone of the lymphoproliferative disease virus of turkeys."
    Sarid R., Chajut A., Gak E., Kim Y., Hixson C.V., Oroszlan S., Tronick S.R., Gazit A., Yaniv A.
    Virology 204:680-691(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ83009_9RETR
AccessioniPrimary (citable) accession number: Q83009
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.