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Protein
Submitted name:

Bacterial regulatory proteins, TetR family

Gene

NE0300

Organism
Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi29 – 48H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Enzyme and pathway databases

BioCyciNEUR228410:GJNO-301-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Bacterial regulatory proteins, TetR familyImported
Gene namesi
Ordered Locus Names:NE0300Imported
OrganismiNitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)Imported
Taxonomic identifieri228410 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesNitrosomonadaceaeNitrosomonas
Proteomesi
  • UP000001416 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi228410.NE0300.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3NI7X-ray2.78A/B1-213[»]
ProteinModelPortaliQ82XH4.
SMRiQ82XH4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ82XH4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 66HTH tetR-type DNA-bindingInterPro annotationAdd BLAST61

Phylogenomic databases

eggNOGiENOG4108ZZP. Bacteria.
ENOG4111P13. LUCA.
HOGENOMiHOG000270283.
OMAiISRTVQW.
OrthoDBiPOG091H02BD.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiView protein in InterPro
IPR013718. COQ9.
IPR009057. Homeobox-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
PfamiView protein in Pfam
PF08511. COQ9. 1 hit.
PF00440. TetR_N. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS50977. HTH_TETR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q82XH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTINNDPMRD AIVDTAVELA AHTSWEAVRL YDIAARLAVS LDEIRLYFRE
60 70 80 90 100
KDELIDAWFD RADSRMLKEA ESAGFLDLVA SERIHHLIMI WLDALAVQRK
110 120 130 140 150
VTRQMIMSKL EFGHIHIQIP AVMRVSRTVQ WVREAAQRDA TFMRRALEES
160 170 180 190 200
TLTTIYLMTF FFWMRDESEN SRHTRQFLKR HLTMAAWLGQ KVYGKDPEKS
210
TVPHKQQIPL QFD
Length:213
Mass (Da):25,050
Last modified:June 1, 2003 - v1
Checksum:i6EC53B72D6F3DCC3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL954747 Genomic DNA. Translation: CAD84211.1.
RefSeqiWP_011110935.1. NC_004757.1.

Genome annotation databases

EnsemblBacteriaiCAD84211; CAD84211; NE0300.
KEGGineu:NE0300.
PATRICi22711435. VBINitEur56163_0332.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL954747 Genomic DNA. Translation: CAD84211.1.
RefSeqiWP_011110935.1. NC_004757.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3NI7X-ray2.78A/B1-213[»]
ProteinModelPortaliQ82XH4.
SMRiQ82XH4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi228410.NE0300.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAD84211; CAD84211; NE0300.
KEGGineu:NE0300.
PATRICi22711435. VBINitEur56163_0332.

Phylogenomic databases

eggNOGiENOG4108ZZP. Bacteria.
ENOG4111P13. LUCA.
HOGENOMiHOG000270283.
OMAiISRTVQW.
OrthoDBiPOG091H02BD.

Enzyme and pathway databases

BioCyciNEUR228410:GJNO-301-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ82XH4.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiView protein in InterPro
IPR013718. COQ9.
IPR009057. Homeobox-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
PfamiView protein in Pfam
PF08511. COQ9. 1 hit.
PF00440. TetR_N. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS50977. HTH_TETR_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ82XH4_NITEU
AccessioniPrimary (citable) accession number: Q82XH4
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 15, 2017
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.