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Q82X88

- RL3_NITEU

UniProt

Q82X88 - RL3_NITEU

Protein

50S ribosomal protein L3

Gene

rplC

Organism
Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciNEUR228410:GJNO-418-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L3UniRule annotation
    Gene namesi
    Name:rplCUniRule annotation
    Ordered Locus Names:NE0401
    OrganismiNitrosomonas europaea (strain ATCC 19718 / NBRC 14298)
    Taxonomic identifieri228410 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesNitrosomonadaceaeNitrosomonas
    ProteomesiUP000001416: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 21521550S ribosomal protein L3PRO_0000077128Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei153 – 1531N5-methylglutamineUniRule annotation

    Post-translational modificationi

    Methylated by PrmB.UniRule annotation

    Keywords - PTMi

    Methylation

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.UniRule annotation

    Protein-protein interaction databases

    STRINGi228410.NE0401.

    Structurei

    3D structure databases

    ProteinModelPortaliQ82X88.
    SMRiQ82X88. Positions 3-211.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L3P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0087.
    HOGENOMiHOG000100368.
    KOiK02906.
    OMAiFMEDGKQ.
    OrthoDBiEOG6WDSMH.
    PhylomeDBiQ82X88.

    Family and domain databases

    HAMAPiMF_01325_B. Ribosomal_L3_B.
    InterProiIPR000597. Ribosomal_L3.
    IPR019927. Ribosomal_L3_bac/org-type.
    IPR019926. Ribosomal_L3_CS.
    IPR009000. Transl_B-barrel.
    [Graphical view]
    PANTHERiPTHR11229. PTHR11229. 1 hit.
    PfamiPF00297. Ribosomal_L3. 1 hit.
    [Graphical view]
    SUPFAMiSSF50447. SSF50447. 1 hit.
    TIGRFAMsiTIGR03625. L3_bact. 1 hit.
    PROSITEiPS00474. RIBOSOMAL_L3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q82X88-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKLGLIGKKI GMTRVFTESG NSIPVTVLDV SGNRVVQVKT EEKDGYSAVQ    50
    LTQGYRRKNR ITKALSGHFS QAGVEAGTVI KEFRVDHDIG SDIKIGSEIS 100
    VELFEVGSKV DVCGISIGKG YAGTIKRHNF SSSRASHGNS RSHNVPGSIG 150
    MAQDPGRVFP GKKMTGHLGN AQCTVQNIEV VRVDAGRGLL FLKGSVPGSK 200
    GNGVFIRPGV KQPSK 215
    Length:215
    Mass (Da):22,847
    Last modified:June 1, 2003 - v1
    Checksum:iA18BEBEB22ACB44C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL954747 Genomic DNA. Translation: CAD84312.1.
    RefSeqiNP_840488.1. NC_004757.1.
    WP_011111036.1. NC_004757.1.

    Genome annotation databases

    EnsemblBacteriaiCAD84312; CAD84312; NE0401.
    GeneIDi1081337.
    KEGGineu:NE0401.
    PATRICi22711673. VBINitEur56163_0444.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL954747 Genomic DNA. Translation: CAD84312.1 .
    RefSeqi NP_840488.1. NC_004757.1.
    WP_011111036.1. NC_004757.1.

    3D structure databases

    ProteinModelPortali Q82X88.
    SMRi Q82X88. Positions 3-211.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 228410.NE0401.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAD84312 ; CAD84312 ; NE0401 .
    GeneIDi 1081337.
    KEGGi neu:NE0401.
    PATRICi 22711673. VBINitEur56163_0444.

    Phylogenomic databases

    eggNOGi COG0087.
    HOGENOMi HOG000100368.
    KOi K02906.
    OMAi FMEDGKQ.
    OrthoDBi EOG6WDSMH.
    PhylomeDBi Q82X88.

    Enzyme and pathway databases

    BioCyci NEUR228410:GJNO-418-MONOMER.

    Family and domain databases

    HAMAPi MF_01325_B. Ribosomal_L3_B.
    InterProi IPR000597. Ribosomal_L3.
    IPR019927. Ribosomal_L3_bac/org-type.
    IPR019926. Ribosomal_L3_CS.
    IPR009000. Transl_B-barrel.
    [Graphical view ]
    PANTHERi PTHR11229. PTHR11229. 1 hit.
    Pfami PF00297. Ribosomal_L3. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50447. SSF50447. 1 hit.
    TIGRFAMsi TIGR03625. L3_bact. 1 hit.
    PROSITEi PS00474. RIBOSOMAL_L3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea."
      Chain P., Lamerdin J.E., Larimer F.W., Regala W., Lao V., Land M.L., Hauser L., Hooper A.B., Klotz M.G., Norton J., Sayavedra-Soto L.A., Arciero D.M., Hommes N.G., Whittaker M.M., Arp D.J.
      J. Bacteriol. 185:2759-2773(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19718 / NBRC 14298.

    Entry informationi

    Entry nameiRL3_NITEU
    AccessioniPrimary (citable) accession number: Q82X88
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 16, 2004
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3