Putative secreted alpha L-arabinofuranosidase II - Streptomyces avermitilis

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Q82P90 (Q82P90_STRAW) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 43. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Putative secreted alpha L-arabinofuranosidase II EMBL BAC68753.1

Gene names

Name:	abfA EMBL BAC68753.1
Ordered Locus Names:	SAV_1043 EMBL BAC68753.1

Organism

Streptomyces avermitilis [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptomycineae › Streptomycetaceae › Streptomyces

Protein attributes

Sequence length	481 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3AKI PDB 3AKF PDB 3AKG PDB 3AKH Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	alpha-N-arabinofuranosidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q82P90 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 61AF442D20B07738
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481

53,105

        10         20         30         40         50         60 
MRRLTVRLFT AVLAALALLT MGTPAHATAP ASPSVTFTNP LAEKRADPHI FKHTDGYYYF 

        70         80         90        100        110        120 
TATVPEYDRI VLRRATTLQG LATAPETTIW TKHASGVMGA HIWAPEIHFI DGKWYVYFAA 

       130        140        150        160        170        180 
GSTSDVWAIR MYVLESGAAN PLTGSWTEKG QIATPVSSFS LDATTFVVNG VRHLAWAQRN 

       190        200        210        220        230        240 
PAEDNNTSLF IAKMANPWTI SGTPTEISQP TLSWETVGYK VNEGPAVIQH GGKVFLTYSA 

       250        260        270        280        290        300 
SATDANYCLG MLSASASADL LNAASWTKSS QPVFKTSEAT GQYGPGHNSF TVSEDGKSDI 

       310        320        330        340        350        360 
LVYHDRNYKD ISGDPLNDPN RRTRLQKVYW NADGTPNFGI PVADGVTPVR FSSYNYPDRY 

       370        380        390        400        410        420 
IRHWDFRARI EANVTNLADS QFRVVTGLAG SGTISLESAN YPGYYLRHKN YEVWVEKNDG 

       430        440        450        460        470        480 
SSAFKNDASF SRRAGLADSA DGIAFESYNY PGRYLRHYEN LLRIQPVSTA LDRQDATFYA 


E

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis." Ikeda H., Ishikawa J., Hanamoto A., Shinose M., Kikuchi H., Shiba T., Sakaki Y., Hattori M., Omura S. Nat. Biotechnol. 21:526-531(2003) [PubMed: 12692562] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	"Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites." Omura S., Ikeda H., Ishikawa J., Hanamoto A., Takahashi C., Shinose M., Takahashi Y., Horikawa H., Nakazawa H., Osonoe T., Kikuchi H., Shiba T., Sakaki Y., Hattori M. Proc. Natl. Acad. Sci. U.S.A. 98:12215-12220(2001) [PubMed: 11572948] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165.
[3]	"Crystal structure of an Exo-1,5-{alpha}-L-arabinofuranosidase from Streptomyces avermitilis provides insights into the mechanism of substrate discrimination between exo- and endo-type enzymes in glycoside hydrolase family 43." Fujimoto Z., Ichinose H., Maehara T., Honda M., Kitaoka M., Kaneko S. J. Biol. Chem. 285:34134-34143(2010) [PubMed: 20739278] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.70 ANGSTROMS) OF 28-481.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000030 Genomic DNA. Translation: BAC68753.1.

RefSeq

NP_822218.1. NC_003155.4.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3AKF	X-ray	2.20	A	28-481	[»]
3AKG	X-ray	1.80	A	28-481	[»]
3AKH	X-ray	1.70	A	28-481	[»]
3AKI	X-ray	2.00	A	28-481	[»]

ProteinModelPortal

SMR

Q82P90. Positions 37-346.

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

GeneID

GenomeReviews

Gene locus SAV1043 in contig BA000030_GR.

KEGG

NMPDR

fig|227882.1.peg.1044.

PATRIC

23715399. VBIStrAve112782_1117.

Organism-specific databases

CMR

Phylogenomic databases

HOGENOM

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

SAVE227882:SAV1043-MONOMER.

Family and domain databases

InterPro

IPR007934. AbfB.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_43_beta-prop.
[Graphical view]

Gene3D

G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.

PANTHER

PTHR22925. Glyco_hydro_43. 1 hit.

Pfam

PF05270. AbfB. 1 hit.
PF04616. Glyco_hydro_43. 1 hit.
[Graphical view]

SUPFAM

SSF110221. AbfB. 1 hit.
SSF75005. Glyco_hydro_43_beta-prop. 1 hit.

ProtoNet

Entry information

Entry name

Q82P90_STRAW

Accession

Primary (citable) accession number: Q82P90

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	December 14, 2011
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info