Q82JW2 (RIMM_STRAW) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosome maturation factor rimM

Gene names

Name:	rimM
Ordered Locus Names:	SAV_2642

Organism

Streptomyces avermitilis [Complete proteome] [HAMAP]

Taxonomic identifier

33903 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptomycineae › Streptomycetaceae › Streptomyces

Protein attributes

Sequence length	186 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP MF_00014
Subcellular location	Cytoplasm By similarity HAMAP MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014
Sequence similarities	Belongs to the rimM family. Contains 1 PRC barrel domain.

Ontologies

Keywords
Biological process	Ribosome biogenesis
Cellular component	Cytoplasm
Molecular function	Chaperone
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 186	186	Ribosome maturation factor rimM HAMAP MF_00014		PRO_0000163361
Regions
	Domain	93 – 166	74	PRC barrel

Sequences

	Sequence		Length	Mass (Da)
	Q82JW2 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: A3C1DB01EBFB78ED	FASTA	186	20,333
	10 20 30 40 50 60 MQLVVARIGR AHGIKGEVTV EVRTDEPELR LGPGAVLATD PASVGPLTIE TGRVHSGRLL 70 80 90 100 110 120 LRFEGVRDRN GAEALRNTLL IAEVDPDEVP EDPDEYYDHQ LMDLDVVTKD GTEVGRITEI 130 140 150 160 170 180 SHLPSQDLFV VERSDGSEVY IPFVEEIVVE IDLEEQRAVI DPPPGLIDDR AEVDSSDTEA ATEADA

References

[1]

"Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites." Omura S., Ikeda H., Ishikawa J., Hanamoto A., Takahashi C., Shinose M., Takahashi Y., Horikawa H., Nakazawa H., Osonoe T., Kikuchi H., Shiba T., Sakaki Y., Hattori M. Proc. Natl. Acad. Sci. U.S.A. 98:12215-12220(2001) [PubMed: 11572948] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165.

[2]

"Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis." Ikeda H., Ishikawa J., Hanamoto A., Shinose M., Kikuchi H., Shiba T., Sakaki Y., Hattori M., Omura S. Nat. Biotechnol. 21:526-531(2003) [PubMed: 12692562] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000030 Genomic DNA. Translation: BAC70353.1.
RefSeq	NP_823818.1. NC_003155.4.
3D structure databases
ProteinModelPortal	Q82JW2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1210489.
GenomeReviews	Gene locus SAV_2642 in contig BA000030_GR.
KEGG	sma:SAV_2642.
NMPDR	fig|227882.1.peg.2644.
PATRIC	23718819. VBIStrAve112782_2824.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG703775.
OMA	PDEFYDH.
ProtClustDB	PRK00122.
Enzyme and pathway databases
BioCyc	SAVE227882:SAV2642-MONOMER.
Family and domain databases
HAMAP	MF_00014. Ribosome_mat_RimM. [Tree]
InterPro	IPR011961. 16S_RimM. IPR007903. PRC_barrel. IPR011033. PRC_barrell-like. IPR002676. RimM. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Gene3D	G3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KO	K02860.
Pfam	PF05239. PRC. 1 hit. PF01782. RimM. 1 hit. [Graphical view]
SUPFAM	SSF50346. PRCH_cytoplasmic. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR02273. 16S_RimM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RIMM_STRAW

Accession

Primary (citable) accession number: Q82JW2

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 29, 2004
Last sequence update:	June 1, 2003
Last modified:	January 25, 2012
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program