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Protein
Submitted name:

Putative DNA ligase

Gene

ligD

Organism
Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSAVE227882:GJU1-2968-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligaseImported
Gene namesi
Name:ligDImported
Ordered Locus Names:SAV_2946Imported
OrganismiStreptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)Imported
Taxonomic identifieri227882 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptomycineaeStreptomycetaceaeStreptomyces
ProteomesiUP000000428 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi227882.SAV_2946.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.
OMAiCVYSLRA.
OrthoDBiEOG6FV833.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

Q82J36-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPITEVAGR RLALSNLEKV IYPATGFTKG EVLHYYATTA DALLAHLHDR
60 70 80 90 100
PISFLRYPDG PDGQVFFAKN VPPGTPDWVV TAEVPRSEGP ARMVLVQDLA
110 120 130 140 150
SLMWAANLVT EFHTHQWRIG TPGQADRLVF DLDPGPPATI VECCEVALWL
160 170 180 190 200
RERLAADGIE SYAKTSGSKG LHLLAALEPT PSGRATEYAK ELAVAAEKDM
210 220 230 240 250
PRLVLHRMTR SLRPGKVFVD WSQNAARKTT AAPYTLRARA EPTVSTPVTW
260 270 280 290
EEVADCTAAR PLAFQAPDIA PRLQEHGDLL APLLDPGHAA PLP
Length:293
Mass (Da):31,946
Last modified:May 31, 2003 - v1
Checksum:i5050C3B57B9455F5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000030 Genomic DNA. Translation: BAC70657.1.
RefSeqiNP_824122.1. NC_003155.4.
WP_010984378.1. NZ_BAVY01000023.1.

Genome annotation databases

EnsemblBacteriaiBAC70657; BAC70657; SAV_2946.
KEGGisma:SAV_2946.
PATRICi23719489. VBIStrAve112782_3153.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000030 Genomic DNA. Translation: BAC70657.1.
RefSeqiNP_824122.1. NC_003155.4.
WP_010984378.1. NZ_BAVY01000023.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi227882.SAV_2946.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC70657; BAC70657; SAV_2946.
KEGGisma:SAV_2946.
PATRICi23719489. VBIStrAve112782_3153.

Phylogenomic databases

HOGENOMiHOG000244654.
KOiK01971.
OMAiCVYSLRA.
OrthoDBiEOG6FV833.

Enzyme and pathway databases

BioCyciSAVE227882:GJU1-2968-MONOMER.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites."
    Omura S., Ikeda H., Ishikawa J., Hanamoto A., Takahashi C., Shinose M., Takahashi Y., Horikawa H., Nakazawa H., Osonoe T., Kikuchi H., Shiba T., Sakaki Y., Hattori M.
    Proc. Natl. Acad. Sci. U.S.A. 98:12215-12220(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680Imported.
  2. "Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis."
    Ikeda H., Ishikawa J., Hanamoto A., Shinose M., Kikuchi H., Shiba T., Sakaki Y., Hattori M., Omura S.
    Nat. Biotechnol. 21:526-531(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiQ82J36_STRAW
AccessioniPrimary (citable) accession number: Q82J36
Entry historyi
Integrated into UniProtKB/TrEMBL: May 31, 2003
Last sequence update: May 31, 2003
Last modified: March 31, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.