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Protein

Gag polyprotein

Gene
N/A
Organism
Human T-cell leukemia virus 2 (HTLV-2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
OrganismiHuman T-cell leukemia virus 2 (HTLV-2)Imported
Taxonomic identifieri11909 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeDeltaretrovirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinSAAS annotation, Virion

Structurei

3D structure databases

ProteinModelPortaliQ82440.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini363 – 378CCHC-typeInterPro annotationAdd BLAST16

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.185.10. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR003139. D_retro_matrix.
IPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF02228. Gag_p19. 1 hit.
PF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q82440-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQIHGLSPT PIPKAPRGLS THHWLNFLQA AYRLQPGPSD FDFQQLRRFL
60 70 80 90 100
KLALKTPIWL NPIDYSLLAS LIPKGYPGRV VEIINILVKN QVSPSAPAAP
110 120 130 140 150
VPTPICPTTT PPPPPPPSPE AHVPPPYVEP TTTQCFPILH PPGAPSAHRP
160 170 180 190 200
WQMKDLQAIK QEVSSSAPGS PQFMQTLRLA VQQFDPTAKD LQDLLQYLCS
210 220 230 240 250
SLVVSLHHQQ LNTLITEAET RGVTGYNPMA GPLRMQANNP AQQGLRREYQ
260 270 280 290 300
NLWLAAFSTL PGNTRDPSWA AILQGLEEPY CAFVERLNVA LDNGLPEGTP
310 320 330 340 350
KEPILRSLAY SNANKECQKI LQARGHTNSP LGEMLRACQA WTPKDKTKVL
360 370 380 390 400
VVQPRRPPPT QPCFRCGKIG HWSRDCTQPR PPPGPCPLCQ DPSHWKRDCP
410 420 430
QLKPPQEEGE PLLLDLSSTS GTTEEKNSLG GEI
Length:433
Mass (Da):47,756
Last modified:November 1, 1996 - v1
Checksum:iB2318CBE3F727A0C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20734 Genomic DNA. Translation: AAA45415.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20734 Genomic DNA. Translation: AAA45415.1.

3D structure databases

ProteinModelPortaliQ82440.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.185.10. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR003139. D_retro_matrix.
IPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF02228. Gag_p19. 1 hit.
PF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ82440_HTLV2
AccessioniPrimary (citable) accession number: Q82440
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: October 5, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.