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Protein

Gag polyprotein

Gene

gag

Organism
Human T-lymphotropic virus 1
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
Gene namesi
Name:gagImported
OrganismiHuman T-lymphotropic virus 1Imported
Taxonomic identifieri11908 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeDeltaretrovirus

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinUniRule annotationSAAS annotation, Virion

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini357 – 37216CCHC-typeInterPro annotationAdd
BLAST

Keywords - Domaini

Zinc-fingerUniRule annotation

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.185.10. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR003139. D_retro_matrix.
IPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF02228. Gag_p19. 1 hit.
PF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q82230-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQIFSRSAS PIPRPPRGLA AHHWLNFLQA AYRLEPGPSS YDFHQLKKFL
60 70 80 90 100
KIALETPVWI CPINYSLLAS LLPKGYPGRV NEILHILIQT QAQIPSRPAP
110 120 130 140 150
PPPSSPTHDP PDSDPQIPPP YVEPTAPQVL PVMHPHGAPP NHRPWQMKDL
160 170 180 190 200
QAIKQEVSQA APGSPQFMQT IRLAVQQFDP TAKDLQDLLQ YLCSSLVASL
210 220 230 240 250
HHQQLDSLIS EAETRGITGY NPLAGPLRVQ ANNPQQQGLR REYQQLWLAA
260 270 280 290 300
FAALPGSAKD PSWASILQGL EEPYHAFVER LNIALDNGLP EGTPKDPILR
310 320 330 340 350
SLAYSNANKE CQKLLQARGH TNSPLGDMLR ACQTWTPKDK TKVLVVQPKK
360 370 380 390 400
PPPNQPCFRC GKAGHWSRDC TQPRPPPGPC PLCQDPTHWK RDCPRLKPTI
410 420
PEPEPEEDAL LLDLPADIPH PKNSIGGEV
Length:429
Mass (Da):47,554
Last modified:November 1, 1996 - v1
Checksum:i8BD34F1C75A1D844
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U19949 Genomic DNA. Translation: AAA85841.1.
AF259264 Genomic DNA. Translation: AAF71370.1.
KC807984 Genomic DNA. Translation: AGO81730.1.
KF797815 Genomic DNA. Translation: AHW99847.1.
KF797817 Genomic DNA. Translation: AHW99853.1.
KF797820 Genomic DNA. Translation: AHW99862.1.
KF797821 Genomic DNA. Translation: AHW99865.1.
KF797822 Genomic DNA. Translation: AHW99868.1.
KF797823 Genomic DNA. Translation: AHW99871.1.
KF797829 Genomic DNA. Translation: AHW99889.1.
KF797830 Genomic DNA. Translation: AHW99892.1.
KF797831 Genomic DNA. Translation: AHW99895.1.
KF797832 Genomic DNA. Translation: AHW99898.1.
KF797834 Genomic DNA. Translation: AHW99904.1.
KF797835 Genomic DNA. Translation: AHW99907.1.
KF797839 Genomic DNA. Translation: AHW99919.1.
KF797840 Genomic DNA. Translation: AHW99922.1.
KF797841 Genomic DNA. Translation: AHW99925.1.
KF797842 Genomic DNA. Translation: AHW99928.1.
KF797845 Genomic DNA. Translation: AHW99937.1.
KF797846 Genomic DNA. Translation: AHW99940.1.
KF797849 Genomic DNA. Translation: AHW99950.1.
KF797857 Genomic DNA. Translation: AHW99973.1.
KF797860 Genomic DNA. Translation: AHW99982.1.
KF797863 Genomic DNA. Translation: AHW99991.1.
KF797864 Genomic DNA. Translation: AHW99994.1.
KF797865 Genomic DNA. Translation: AHW99997.1.
KF797867 Genomic DNA. Translation: AHX00004.1.
KF797871 Genomic DNA. Translation: AHX00016.1.
KF797872 Genomic DNA. Translation: AHX00019.1.
KF797873 Genomic DNA. Translation: AHX00022.1.
KF797877 Genomic DNA. Translation: AHX00034.1.
KF797878 Genomic DNA. Translation: AHX00037.1.
KF797880 Genomic DNA. Translation: AHX00043.1.
KF797881 Genomic DNA. Translation: AHX00046.1.
KF797885 Genomic DNA. Translation: AHX00058.1.
KF797886 Genomic DNA. Translation: AHX00061.1.
KF797888 Genomic DNA. Translation: AHX00067.1.
KF797889 Genomic DNA. Translation: AHX00070.1.
KF797890 Genomic DNA. Translation: AHX00073.1.
KF797896 Genomic DNA. Translation: AHX00091.1.
KF797898 Genomic DNA. Translation: AHX00097.1.
KF797911 Genomic DNA. Translation: AHX00126.1.
AB513134 Genomic DNA. Translation: BAH85785.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U19949 Genomic DNA. Translation: AAA85841.1.
AF259264 Genomic DNA. Translation: AAF71370.1.
KC807984 Genomic DNA. Translation: AGO81730.1.
KF797815 Genomic DNA. Translation: AHW99847.1.
KF797817 Genomic DNA. Translation: AHW99853.1.
KF797820 Genomic DNA. Translation: AHW99862.1.
KF797821 Genomic DNA. Translation: AHW99865.1.
KF797822 Genomic DNA. Translation: AHW99868.1.
KF797823 Genomic DNA. Translation: AHW99871.1.
KF797829 Genomic DNA. Translation: AHW99889.1.
KF797830 Genomic DNA. Translation: AHW99892.1.
KF797831 Genomic DNA. Translation: AHW99895.1.
KF797832 Genomic DNA. Translation: AHW99898.1.
KF797834 Genomic DNA. Translation: AHW99904.1.
KF797835 Genomic DNA. Translation: AHW99907.1.
KF797839 Genomic DNA. Translation: AHW99919.1.
KF797840 Genomic DNA. Translation: AHW99922.1.
KF797841 Genomic DNA. Translation: AHW99925.1.
KF797842 Genomic DNA. Translation: AHW99928.1.
KF797845 Genomic DNA. Translation: AHW99937.1.
KF797846 Genomic DNA. Translation: AHW99940.1.
KF797849 Genomic DNA. Translation: AHW99950.1.
KF797857 Genomic DNA. Translation: AHW99973.1.
KF797860 Genomic DNA. Translation: AHW99982.1.
KF797863 Genomic DNA. Translation: AHW99991.1.
KF797864 Genomic DNA. Translation: AHW99994.1.
KF797865 Genomic DNA. Translation: AHW99997.1.
KF797867 Genomic DNA. Translation: AHX00004.1.
KF797871 Genomic DNA. Translation: AHX00016.1.
KF797872 Genomic DNA. Translation: AHX00019.1.
KF797873 Genomic DNA. Translation: AHX00022.1.
KF797877 Genomic DNA. Translation: AHX00034.1.
KF797878 Genomic DNA. Translation: AHX00037.1.
KF797880 Genomic DNA. Translation: AHX00043.1.
KF797881 Genomic DNA. Translation: AHX00046.1.
KF797885 Genomic DNA. Translation: AHX00058.1.
KF797886 Genomic DNA. Translation: AHX00061.1.
KF797888 Genomic DNA. Translation: AHX00067.1.
KF797889 Genomic DNA. Translation: AHX00070.1.
KF797890 Genomic DNA. Translation: AHX00073.1.
KF797896 Genomic DNA. Translation: AHX00091.1.
KF797898 Genomic DNA. Translation: AHX00097.1.
KF797911 Genomic DNA. Translation: AHX00126.1.
AB513134 Genomic DNA. Translation: BAH85785.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.185.10. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR003139. D_retro_matrix.
IPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF02228. Gag_p19. 1 hit.
PF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Nucleotide sequence analysis of a full-length human T-cell leukemia virus type I from adult T-cell leukemia cells: a prematurely terminated PX open reading frame II."
    Chou K.S., Okayama A., Tachibana N., Lee T.H., Essex M.
    Int. J. Cancer 60:701-706(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Human T cell leukemia virus type 1 (proviral) Chinese variant."
    Cao F., Ji Y., Zhuang W., Jia G.
    Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: WHPImported.
  3. "APOBEC3G generates nonsense mutations in human T-cell leukemia virus type 1 proviral genomes in vivo."
    Fan J., Ma G., Nosaka K., Tanabe J., Satou Y., Koito A., Wain-Hobson S., Vartanian J.P., Matsuoka M.
    J. Virol. 84:7278-7287(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: B1033-2009Imported.
  4. "Epidemiological Analysis of HTLV-1 and HTLV-2 Infection among Different Population in Central China."
    Ma Y., Zheng S., Wang N., Duan Y., Sun X., Jin J., Zang W., Li M., Wang Y., Zhao G.
    PLoS ONE 8:E66795-E66795(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: HN1Imported.
  5. Ma Y.Y., Zheng S.G., Zhao G.Q., Wang Y.Y., Zang W.Q.
    Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: HN1Imported.
  6. "Molecular characterization of human T-cell lymphotropic virus type 1 full and partial genomes by illumina massively parallel sequencing technology."
    Pessoa R., Watanabe J.T., Nukui Y., Pereira J., Kasseb J., Penalva de Oliveira A.C., Segurado A.C., Sanabani S.S.
    PLoS ONE 9:E93374-E93374(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 012BR_ASY002_HCImported, 012BR_ASY009Imported, 012BR_ASY011Imported, 012BR_ASY012Imported, 012BR_ASY012_HCImported, 012BR_ASY018Imported, 012BR_ASY019_1Imported, 012BR_ASY021Imported, 012BR_ASY023Imported, 012BR_ASY024Imported, 012BR_ASY027Imported, 012BR_ASY028Imported, 012BR_ASY037Imported, 012BR_ASY040Imported, 012BR_ASY042Imported, 012BR_ASY044Imported, 012BR_ASY052Imported, 012BR_ASY053Imported, 012BR_ASY070Imported, 012BR_ASY083_1Imported, 012BR_ASY113Imported, 012BR_ATL010Imported, 012BR_HAM006_HCImported, 012BR_HAM008_HCImported, 012BR_HAM009_HCImported, 012BR_HAM013_HCImported, 012BR_HAM021_HCImported, 012BR_HAM022_HCImported, 012BR_HAM077Imported, 012BR_HAM079Imported, 012BR_HAM082Imported, 012BR_HAM092Imported, 012BR_HAM095Imported, 012BR_HAM096Imported, 012BR_HAM114Imported, 012BR_HAM116_1Imported, 012BR_HAM312Imported, 012BR_HAM449Imported, 012BR_HAM450Imported and 012BR_HAM452Imported.

Entry informationi

Entry nameiQ82230_9DELA
AccessioniPrimary (citable) accession number: Q82230
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.