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Protein
Submitted name:

Spore coat polysaccharide biosynthesis protein spsK

Gene

rfbD

Organism
Bacillus anthracis
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei127 – 1271NADPCombined sources
Binding sitei131 – 1311NADPCombined sources

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi13 – 142NADPCombined sources
Nucleotide bindingi38 – 392NADPCombined sources
Nucleotide bindingi62 – 643NADPCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Keywords - Ligandi

NADPCombined sources, Nucleotide-bindingCombined sources

Enzyme and pathway databases

BioCyciANTHRA:RFBD-MONOMER.
BANT260799:GJAJ-1214-MONOMER.
BANT261594:GJ7F-1268-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Spore coat polysaccharide biosynthesis protein spsKImported
Submitted name:
Spore coat proteinImported
Submitted name:
dTDP-4-dehydrorhamnose reductaseImported (EC:1.1.1.133Imported)
Gene namesi
Name:rfbDImported
Synonyms:spsKImported
Ordered Locus Names:GBAA_1231Imported
ORF Names:AB163_10460Imported, AB164_10305Imported, AB165_23775Imported, AB166_26685Imported, AB167_12540Imported, AB168_03055Imported, AB169_20210Imported, AB170_18580Imported, AB171_21300Imported, ADK18_06100Imported, ADT20_17365Imported, ADT21_06065Imported, BASH2_04622Imported, BF27_737Imported
OrganismiBacillus anthracisImported
Taxonomic identifieri1392 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillusBacillus cereus group
Proteomesi
  • UP000054520 Componenti: Unassembled WGS sequence
  • UP000000594 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid proteinImported, Virion

Interactioni

Protein-protein interaction databases

STRINGi198094.BA_1231.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3SC6X-ray2.65A/B/C/D/E/F1-284[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 280277RmlD_sub_bindInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105DBZ. Bacteria.
COG1091. LUCA.
HOGENOMiHOG000227711.
KOiK00067.
OMAiIRTAWVY.
OrthoDBiEOG6HTP2V.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR005913. dTDP_dehydrorham_reduct.
IPR016040. NAD(P)-bd_dom.
IPR029903. RmlD-like-bd.
[Graphical view]
PANTHERiPTHR10491. PTHR10491. 1 hit.
PfamiPF04321. RmlD_sub_bind. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR01214. rmlD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q81TN9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKERVIITGA NGQLGKQLQE ELNPEEYDIY PFDKKLLDIT NISQVQQVVQ
60 70 80 90 100
EIRPHIIIHC AAYTKVDQAE KERDLAYVIN AIGARNVAVA SQLVGAKLVY
110 120 130 140 150
ISTDYVFQGD RPEGYDEFHN PAPINIYGAS KYAGEQFVKE LHNKYFIVRT
160 170 180 190 200
SWLYGKYGNN FVKTMIRLGK EREEISVVAD QIGSPTYVAD LNVMINKLIH
210 220 230 240 250
TSLYGTYHVS NTGSCSWFEF AKKIFSYANM KVNVLPVSTE EFGAAAARPK
260 270 280
YSIFQHNMLR LNGFLQMPSW EEGLERFFIE TKSH
Length:284
Mass (Da):32,411
Last modified:June 1, 2003 - v1
Checksum:i6802273C25E22833
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017334 Genomic DNA. Translation: AAT30320.1.
CP009902 Genomic DNA. Translation: AJH86283.1.
AP014833 Genomic DNA. Translation: BAR78029.1.
LFYJ01000006 Genomic DNA. Translation: KOM63961.1.
LFYH01000030 Genomic DNA. Translation: KOM64810.1.
LFYG01000020 Genomic DNA. Translation: KOM70900.1.
LFYI01000017 Genomic DNA. Translation: KOM78614.1.
LFYF01000013 Genomic DNA. Translation: KOM84611.1.
LGIE01000027 Genomic DNA. Translation: KOM91386.1.
LGIF01000021 Genomic DNA. Translation: KON04484.1.
LGIG01000025 Genomic DNA. Translation: KON16082.1.
LGID01000042 Genomic DNA. Translation: KON24324.1.
LHUN01000008 Genomic DNA. Translation: KOR62279.1.
LHUO01000014 Genomic DNA. Translation: KOR66704.1.
LGCD01000018 Genomic DNA. Translation: KOS29802.1.
RefSeqiWP_000664670.1. NZ_LHUO01000014.1.

Genome annotation databases

EnsemblBacteriaiAAT30320; AAT30320; GBAA_1231.
AJH86283; AJH86283; BF27_737.
KOM63961; KOM63961; AB168_03055.
KOM64810; KOM64810; AB166_26685.
KOM70900; KOM70900; AB165_23775.
KOM78614; KOM78614; AB167_12540.
KOM84611; KOM84611; AB164_10305.
KOM91386; KOM91386; AB169_20210.
KON04484; KON04484; AB170_18580.
KON16082; KON16082; AB171_21300.
KON24324; KON24324; AB163_10460.
KOR62279; KOR62279; ADT21_06065.
KOR66704; KOR66704; ADT20_17365.
KOS29802; KOS29802; ADK18_06100.
KEGGibanh:HYU01_06315.
bar:GBAA_1231.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017334 Genomic DNA. Translation: AAT30320.1.
CP009902 Genomic DNA. Translation: AJH86283.1.
AP014833 Genomic DNA. Translation: BAR78029.1.
LFYJ01000006 Genomic DNA. Translation: KOM63961.1.
LFYH01000030 Genomic DNA. Translation: KOM64810.1.
LFYG01000020 Genomic DNA. Translation: KOM70900.1.
LFYI01000017 Genomic DNA. Translation: KOM78614.1.
LFYF01000013 Genomic DNA. Translation: KOM84611.1.
LGIE01000027 Genomic DNA. Translation: KOM91386.1.
LGIF01000021 Genomic DNA. Translation: KON04484.1.
LGIG01000025 Genomic DNA. Translation: KON16082.1.
LGID01000042 Genomic DNA. Translation: KON24324.1.
LHUN01000008 Genomic DNA. Translation: KOR62279.1.
LHUO01000014 Genomic DNA. Translation: KOR66704.1.
LGCD01000018 Genomic DNA. Translation: KOS29802.1.
RefSeqiWP_000664670.1. NZ_LHUO01000014.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3SC6X-ray2.65A/B/C/D/E/F1-284[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198094.BA_1231.

Protocols and materials databases

DNASUi1087655.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT30320; AAT30320; GBAA_1231.
AJH86283; AJH86283; BF27_737.
KOM63961; KOM63961; AB168_03055.
KOM64810; KOM64810; AB166_26685.
KOM70900; KOM70900; AB165_23775.
KOM78614; KOM78614; AB167_12540.
KOM84611; KOM84611; AB164_10305.
KOM91386; KOM91386; AB169_20210.
KON04484; KON04484; AB170_18580.
KON16082; KON16082; AB171_21300.
KON24324; KON24324; AB163_10460.
KOR62279; KOR62279; ADT21_06065.
KOR66704; KOR66704; ADT20_17365.
KOS29802; KOS29802; ADK18_06100.
KEGGibanh:HYU01_06315.
bar:GBAA_1231.

Phylogenomic databases

eggNOGiENOG4105DBZ. Bacteria.
COG1091. LUCA.
HOGENOMiHOG000227711.
KOiK00067.
OMAiIRTAWVY.
OrthoDBiEOG6HTP2V.

Enzyme and pathway databases

BioCyciANTHRA:RFBD-MONOMER.
BANT260799:GJAJ-1214-MONOMER.
BANT261594:GJ7F-1268-MONOMER.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR005913. dTDP_dehydrorham_reduct.
IPR016040. NAD(P)-bd_dom.
IPR029903. RmlD-like-bd.
[Graphical view]
PANTHERiPTHR10491. PTHR10491. 1 hit.
PfamiPF04321. RmlD_sub_bind. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR01214. rmlD. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ames AncestorImported and Ames ancestorImported.
  2. "2.65 Angstrom resolution crystal structure of dTDP-4-dehydrorhamnose reductase (rfbD) from Bacillus anthracis str. Ames in complex with NADP."
    Center for Structural Genomics of Infectious Diseases (CSGID)
    Halavaty A.S., Kuhn M., Shuvalova L., Minasov G., Peterson S., Anderson W.F.
    Submitted (JUN-2011) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.65 ANGSTROMS) IN COMPLEX WITH NADP.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 2002013094Imported.
  4. "Bacillus anthracis whole genome sequence."
    Okutani A., Morikawa S., Inoue S.
    Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Shikan-NIIDImported.
  5. "Draft genome sequence of Bacillus anthracis strain K0021."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K0021Imported.
  6. "Draft genome sequence of Bacillus anthracis strain K1129."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K1129Imported.
  7. "Draft genome sequence of Bacillus anthracis strain K1285."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K1285Imported.
  8. "Draft genome sequence of Bacillus anthracis strain K2129."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K2129Imported.
  9. "Draft genome sequence of Bacillus anthracis strain K2883."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K2883Imported.
  10. "Draft genome sequence of Bacillus anthracis strain K3974."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K3974Imported.
  11. "Draft genome sequence of Bacillus anthracis strain K4834."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K4834Imported.
  12. "Draft genome sequence of Bacillus anthracis strain K8215."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K8215Imported.
  13. "Draft genome sequence of Bacillus anthracis strain PAK-1."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUN-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: PAK-1Imported.
  14. "Draft genome sequence of Bacillus anthracis strain A0021."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A0021Imported.
  15. "Draft genome sequence of Bacillus anthracis strain A0389."
    Consortium for Microbial Forensics and Genomics (microFORGE)
    Knight B.M., O'Shea R.M., Jones B.A., Roberts D.P., Lin D., Hari K., Winegar R.A.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A0389Imported.
  16. "Draft genome sequences of two South African Bacillus anthracis strains."
    Lekota K.E., Mafofo J., Madoroba E., Rees J., van Heerden H., Muchadeyi F.C.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 3631_1CImported.

Entry informationi

Entry nameiQ81TN9_BACAN
AccessioniPrimary (citable) accession number: Q81TN9
Secondary accession number(s): E9RAJ8
, E9RAJ9, Q6I1X0, Q6KVR2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 8, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.