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Protein
Submitted name:

Homeodomain protein LMX1b

Gene
N/A
Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Homeodomain protein LMX1bImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Expressioni

Gene expression databases

ExpressionAtlasiQ811V1. baseline.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022953.

Structurei

3D structure databases

ProteinModelPortaliQ811V1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

HomeoboxImported

Phylogenomic databases

eggNOGiNOG243427.
HOGENOMiHOG000231629.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q811V1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ERQLRKGDEF VLKEGQLLCK GDYEKEKDLL SSVSPDESDS VKSEDEDGDM
60 70 80 90 100
KPAKGQGSQN KGSGDDGKDP RRPKRPRTIL TTQQRRAFKA SFEVSSKPCR

KVRET
Length:105
Mass (Da):11,829
Last modified:June 1, 2003 - v1
Checksum:iB8B4B76859DC8580
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei105 – 1051Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY169317 mRNA. Translation: AAO17712.1.
UniGeneiRn.92364.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY169317 mRNA. Translation: AAO17712.1.
UniGeneiRn.92364.

3D structure databases

ProteinModelPortaliQ811V1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022953.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiNOG243427.
HOGENOMiHOG000231629.

Gene expression databases

ExpressionAtlasiQ811V1. baseline.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Homeobox gene characterization in adult rat dorsal root ganglia."
    Vogelaar C.F., Hoekman M.F.M., Burbach J.P.H.
    Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: WistarImported.

Entry informationi

Entry nameiQ811V1_RAT
AccessioniPrimary (citable) accession number: Q811V1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: July 22, 2015
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.