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Q80ZB2 (Q80ZB2_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Abca1 RGD 631344
OrganismRattus norvegicus (Rat) EMBL AAO53557.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length2201 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ABC transporter superfamily. RuleBase RU000684

Sequences

Sequence LengthMass (Da)Tools
Q80ZB2 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: B1472978BFC3E6B8

FASTA2,201246,556
        10         20         30         40         50         60 
MPSAGTLPWV QGIICNANNP CFRYPTPGEA PGVVGNFNKS IVSRLFSDAQ RILLYSQKDT 

        70         80         90        100        110        120 
SIRDMHKVLR TLQQIKHPNS NLKLQDFLVD NETFSGFLQH SLSLPRSAVD NLLQADVSLQ 

       130        140        150        160        170        180 
KVFLQGYQLH LASLCNGSKL EEIIRPEDLK VSALCSLPRE KLDAPERELR SNMDILKPVM 

       190        200        210        220        230        240 
TKLNSTSLLP TQHLAEATTT LLDSLGGLAQ ELFSTKSWSD MRQEVMFLTN VNNSGSSTQI 

       250        260        270        280        290        300 
YQAVSRIVCG HPEGGGLKIK SLNWYEDNNY KALFGGNGTE EDTDTFYDNS TTPYCNDLMK 

       310        320        330        340        350        360 
NLESSPLSRI IWKALKPLLI GKILYTPDTP ATRQVMAEVN KTFQELALFP DLEGMWEELS 

       370        380        390        400        410        420 
PQIWTFMESS QEMDLVRPML DLRGNDQFWE RKLDGLYWTA QDIMAFLAKN PEDVQSPNGS 

       430        440        450        460        470        480 
VYTWREAFNE TNQAIQTISR FMECVNLNKL EPIPTEVTLI NKSMDLLDAR KFSAGIDFTG 

       490        500        510        520        530        540 
ITPDSVELPH HVKDKIRMDI DNVERTNKIK DGYWDPGPRA DPFEDMRYVW GGFAYLQDVV 

       550        560        570        580        590        600 
EQAIIRVLTG TEKKTGVYVQ QMPYPCYVDD IFLRVMSRSM PLFMTLAWIY SVAVIIKSIV 

       610        620        630        640        650        660 
YEKEARLKET MRIMGLDNGI LWFSWFISSL IPLLVSAGLL VIILKLGDLL PYSDPSVVFV 

       670        680        690        700        710        720 
FLSVFAVVTI LQCFLISTLF SRXNLAAACG GIIYFTLYLP YVLCVAWQDY VGFSIKIFAS 

       730        740        750        760        770        780 
LLSPVAFGFG CEYFALFEEQ GIGVQWDNLF KSPVEEDGFN LTTSVSMMLF DTFIYGVMTW 

       790        800        810        820        830        840 
YIEAVFPGQY GIPRPWYFPC TKSYWFGEEI DEKSHPGSSQ KGASEICMEE EPTHLKLGVS 

       850        860        870        880        890        900 
IQNLVKVYRD GMKVAVDGLA LNFYEGQITS FLGHNGAGKT TTMSILTGLF PPTSGTAYIL 

       910        920        930        940        950        960 
GKDIRSEMNS IRQNLGVCPQ HNVLFDMLTV EEHIWFYARL KGLSEKHVKA EMEQMALDVG 

       970        980        990       1000       1010       1020 
LPPSKLKSKT SQLSGGMQRK LSVALAFVGG SKVVILDEPT AGVDPYSRRG IWELLLKYRQ 

      1030       1040       1050       1060       1070       1080 
GRTIILSTHH MDEADILGDR IAIISHGKLC CVGSSLFLKN QLGTGYYLTL VKKDVESSLS 

      1090       1100       1110       1120       1130       1140 
SCRNSSSTVS CLKKEDSVSQ SSSDAGLGSD HESDTLTIDV SAISNLIRKH VSEARLVEDI 

      1150       1160       1170       1180       1190       1200 
GHELTYVLPY EAAKEGAFVE LFHEIDDRLS DLGISSYGIS ETTLEEIFLK VAEESGVDAE 

      1210       1220       1230       1240       1250       1260 
TSDGTLPARR NRRAFGDKQS CLHPFTEDDA VDPNDSDLDP ESRETDLLSG MDGKGSYQLK 

      1270       1280       1290       1300       1310       1320 
GWKLTQQQFV ALLWKRLLIA RRSRKGFFAQ IVLPAVFVCI ALVFSLIVPP FGKYPNLELQ 

      1330       1340       1350       1360       1370       1380 
PWMYNEQYTF VSNDAPEDMG TQELLNALTK DPGFGTRCME GNPIPNTPCL VGEEDWTTGP 

      1390       1400       1410       1420       1430       1440 
VPQTLMDLFQ NGNWTMKNPS PSCQCSSDKI KKMLPVCPPG AGGLPPPQRK QKTADILQNL 

      1450       1460       1470       1480       1490       1500 
TGRNNSDYLV KTYVQIIAKS LKNKVWVNEF RYGGFSLGVS DSQALPPSQE VNNAIKQMKK 

      1510       1520       1530       1540       1550       1560 
LLKLTKDSSA DRFLSSLGRF MTGLDTKNNV KVWFNNKGWH AISSFLNVIN NAILRANLQK 

      1570       1580       1590       1600       1610       1620 
GENPSQYGIT AFNHPLNLTK QQLSEVALMT TSVDVLVSIC VIFAMSFVPA SFVVFLIQER 

      1630       1640       1650       1660       1670       1680 
VSKAKHLQFI CGVKPVIYWL SNFVWDMCNY VVPATLVVII FICFQQKSYV SSTNLPVLAL 

      1690       1700       1710       1720       1730       1740 
LLLLYGWSIT PLMYPASFVF KIPSTAYVVL TSVNLFIGIN GSVATFVLEL FTNNKFNDIN 

      1750       1760       1770       1780       1790       1800 
DILKSVFLIF PHFCLGRGLI DMVKNQAMAD ALERFGENRF VSPLSWDLVG RNLFAMAVEG 

      1810       1820       1830       1840       1850       1860 
VVFFLVTVLI QYRFFIRPRP VKARLPPLND EDEDVRRERQ RILEGGGQND ILEIKELTKI 

      1870       1880       1890       1900       1910       1920 
YRRKRKPAVD RICVGIPPGE CFGLLGVNGA GKTSTFKMLT GDTAVTRGDA LLNKNSILSN 

      1930       1940       1950       1960       1970       1980 
IHEVHQNMGY CPQFDAITEL LTGREHLEFF ALLRGVPEKE VGKVGEWAIR KLGLVKYGEK 

      1990       2000       2010       2020       2030       2040 
YASNYSGGNK RKLSTAIALI GGPPVVFLDE PTTGMDPKAR RFLWNCALSI IKEGRSVVLT 

      2050       2060       2070       2080       2090       2100 
SHSMEECEAL CTRMAIMVNG RFRCLGSVQH LKNRFGDGYT IVVRIAGSNP DLKPVQEFFG 

      2110       2120       2130       2140       2150       2160 
LAFPGSVLKE KHRNMLQYQL PSSLSSLARI FSILSQSKKR LHIEDYSVSQ TTLDQVFVNF 

      2170       2180       2190       2200 
AKDQSDDDHL KDLSLHKNQT VVDVAVLTSF LQDEKVKESY V 

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References

[1]"Cloning and Characterization of Rat Liver Abca1."
Ananthanarayanan M., Mirza M.F.
Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Sprague-Dawley EMBL AAO53557.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY208182 mRNA. Translation: AAO53557.1.
RefSeqNP_835196.1. NM_178095.2.
UniGeneRn.148916.
Rn.231131.

3D structure databases

ProteinModelPortalQ80ZB2.
ModBaseSearch...
MobiDBSearch...

PTM databases

PhosphoSiteQ80ZB2.

Proteomic databases

PRIDEQ80ZB2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID313210.
KEGGrno:313210.
UCSCRGD:631344. rat.

Organism-specific databases

CTD19.
RGD631344. Abca1.

Phylogenomic databases

HOGENOMHOG000231547.
HOVERGENHBG050436.
InParanoidQ80ZB2.
KOK05641.
PhylomeDBQ80ZB2.

Gene expression databases

GenevestigatorQ80ZB2.

Family and domain databases

Gene3D3.40.50.300. 2 hits.
InterProIPR003593. AAA+_ATPase.
IPR026082. ABC_A.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERPTHR19229. PTHR19229. 1 hit.
PfamPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMSSF52540. SSF52540. 2 hits.
PROSITEPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio665805.
PROQ80ZB2.

Entry information

Entry nameQ80ZB2_RAT
AccessionPrimary (citable) accession number: Q80ZB2
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: July 9, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)