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Protein

Lipoma HMGIC fusion partner-like 1 protein

Gene

Lhfpl1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Lipoma HMGIC fusion partner-like 1 protein
Gene namesi
Name:Lhfpl1
Synonyms:Lhfp
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi727927. Lhfpl1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei86 – 10621HelicalSequence analysisAdd
BLAST
Transmembranei122 – 14221HelicalSequence analysisAdd
BLAST
Transmembranei165 – 18521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 220197Lipoma HMGIC fusion partner-like 1 proteinPRO_0000244762Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi153 – 1531N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ80WE5.

Expressioni

Gene expression databases

BgeeiENSRNOG00000027601.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000037132.

Family & Domainsi

Sequence similaritiesi

Belongs to the LHFP family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG4026. Eukaryota.
ENOG410XSUB. LUCA.
GeneTreeiENSGT00550000074479.
HOGENOMiHOG000007007.
HOVERGENiHBG080585.
InParanoidiQ80WE5.
OMAiKPVMLVE.
OrthoDBiEOG091G10EV.
PhylomeDBiQ80WE5.
TreeFamiTF321143.

Family and domain databases

InterProiIPR019372. Lipome_HGMIC_fus_partner-like.
[Graphical view]
PfamiPF10242. L_HMGIC_fpl. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q80WE5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSSLTLVGT FWAFLSLVTA VASSTSYFLP YWLFGSQLGK PVSFSTFRRC
60 70 80 90 100
NYPVRGDGHN LIMVEECGRY ASFAAIPSLA WQMCTVVTGA GCALLLLVAL
110 120 130 140 150
AAVLGCCMEE LISRMMGRCM GAAQFVGGLL ISSGCALYPL GWNSPEVMQT
160 170 180 190 200
CGNVSNQFQL GTCRLGWAYY CAGGGAAAAM LICTWLSCFA GRNPKPVMLV
210 220
ENIMRNTNSY AMELDHCLKP
Length:220
Mass (Da):23,746
Last modified:June 1, 2003 - v1
Checksum:i674AA4BA6A3CDADD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY253667 mRNA. Translation: AAP14356.1.
RefSeqiNP_851599.1. NM_181085.2.
XP_008771627.1. XM_008773405.1.
UniGeneiRn.92478.

Genome annotation databases

EnsembliENSRNOT00000030400; ENSRNOP00000037132; ENSRNOG00000027601.
GeneIDi300286.
KEGGirno:300286.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY253667 mRNA. Translation: AAP14356.1.
RefSeqiNP_851599.1. NM_181085.2.
XP_008771627.1. XM_008773405.1.
UniGeneiRn.92478.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000037132.

Proteomic databases

PaxDbiQ80WE5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000030400; ENSRNOP00000037132; ENSRNOG00000027601.
GeneIDi300286.
KEGGirno:300286.

Organism-specific databases

CTDi340596.
RGDi727927. Lhfpl1.

Phylogenomic databases

eggNOGiKOG4026. Eukaryota.
ENOG410XSUB. LUCA.
GeneTreeiENSGT00550000074479.
HOGENOMiHOG000007007.
HOVERGENiHBG080585.
InParanoidiQ80WE5.
OMAiKPVMLVE.
OrthoDBiEOG091G10EV.
PhylomeDBiQ80WE5.
TreeFamiTF321143.

Miscellaneous databases

PROiQ80WE5.

Gene expression databases

BgeeiENSRNOG00000027601.

Family and domain databases

InterProiIPR019372. Lipome_HGMIC_fus_partner-like.
[Graphical view]
PfamiPF10242. L_HMGIC_fpl. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLHPL1_RAT
AccessioniPrimary (citable) accession number: Q80WE5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: June 1, 2003
Last modified: September 7, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.