Q80U78 (PUM1_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 85.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Pumilio homolog 1 | ||||
| Gene names |
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| Organism | Mus musculus (Mouse) [Reference proteome] | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 1189 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of mRNA targets. May be required to support proliferation and self-renewal of stem cells By similarity. |
| Subunit structure | Binds in a sequence-specific manner to the 3'-UTR of some mRNAs. |
| Subcellular location | Cytoplasm Probable. |
| Tissue specificity | Widely expressed. Expressed in brain, heart, kidney, liver, lung, skin, intestine, spleen, testis and thymus. Weakly or not expressed in muscles and stomach. Expressed at various stages of myeloid and lymphoid cell development. Ref.1 |
| Domain | The pumilio repeats mediate the association with RNA by packing together to form a right-handed superhelix that approximates a half doughnut. The number as well as the specific sequence of the repeats determine the specificity for target mRNAs By similarity. |
| Sequence similarities | Contains 1 PUM-HD domain. Contains 8 pumilio repeats. |
| Sequence caution | The sequence BAC65487.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Translation regulation |
| Cellular component | Cytoplasm |
| Coding sequence diversity | Alternative splicing |
| Domain | Repeat |
| Ligand | RNA-binding |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | regulation of translation Inferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | RNA binding Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q80U78-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q80U78-2) The sequence of this isoform differs from the canonical sequence as follows: 418-418: Missing. 952-953: Missing. | ||||||
| Isoform 3 (identifier: Q80U78-3) The sequence of this isoform differs from the canonical sequence as follows: 418-418: Missing. | ||||||
| Isoform 4 (identifier: Q80U78-4) The sequence of this isoform differs from the canonical sequence as follows: 181-189: DHSVSQPIM → GNLALASLL 190-1189: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1189 | 1189 | Pumilio homolog 1 | PRO_0000075918 | |||||
Regions | |||||||||
| Domain | 829 – 1171 | 343 | PUM-HD | ||||||
| Repeat | 849 – 884 | 36 | Pumilio 1 | ||||||
| Repeat | 885 – 920 | 36 | Pumilio 2 | ||||||
| Repeat | 921 – 958 | 38 | Pumilio 3 | ||||||
| Repeat | 959 – 994 | 36 | Pumilio 4 | ||||||
| Repeat | 995 – 1030 | 36 | Pumilio 5 | ||||||
| Repeat | 1031 – 1066 | 36 | Pumilio 6 | ||||||
| Repeat | 1067 – 1102 | 36 | Pumilio 7 | ||||||
| Repeat | 1106 – 1145 | 40 | Pumilio 8 | ||||||
| Compositional bias | 393 – 614 | 222 | Ala-rich | ||||||
| Compositional bias | 476 – 524 | 49 | Gln-rich | ||||||
| Compositional bias | 643 – 816 | 174 | Ser-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 19 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 75 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 98 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 106 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 124 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 209 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 710 | 1 | Phosphoserine Ref.5 | ||||||
| Modified residue | 807 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 181 – 189 | 9 | DHSVSQPIM → GNLALASLL in isoform 4. | VSP_009315 | |||||
| Alternative sequence | 190 – 1189 | 1000 | Missing in isoform 4. | VSP_009316 | |||||
| Alternative sequence | 418 | 1 | Missing in isoform 2 and isoform 3. | VSP_009317 | |||||
| Alternative sequence | 952 – 953 | 2 | Missing in isoform 2. | VSP_009318 | |||||
Experimental info | |||||||||
| Sequence conflict | 186 | 1 | Q → H in AAG42319. Ref.1 | ||||||
| Sequence conflict | 545 | 1 | A → D in AAG42319. Ref.1 | ||||||
| Sequence conflict | 552 | 1 | P → T in AAG42319. Ref.1 | ||||||
| Sequence conflict | 555 | 1 | A → G in AAG42319. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Mouse Pum1 and Pum2 genes, members of the Pumilio family of RNA-binding proteins, show differential expression in fetal and adult hematopoietic stem cells and progenitors." Spassov D.S., Jurecic R. Blood Cells Mol. Dis. 30:55-69(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY. Strain: C57BL/6J. |
| [2] | "Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries." Okazaki N., Kikuno R., Ohara R., Inamoto S., Aizawa H., Yuasa S., Nakajima D., Nagase T., Ohara O., Koga H. DNA Res. 10:35-48(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [3] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Strain: C57BL/6J. Tissue: Eye. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). Strain: C57BL/6. Tissue: Brain. |
| [5] | "Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry." Zanivan S., Gnad F., Wickstroem S.A., Geiger T., Macek B., Cox J., Faessler R., Mann M. J. Proteome Res. 7:5314-5326(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-710, MASS SPECTROMETRY. Tissue: Melanoma. |
| [6] | "The phagosomal proteome in interferon-gamma-activated macrophages." Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P. Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-124, MASS SPECTROMETRY. Tissue: Macrophage. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF321909 mRNA. Translation: AAG42319.1. AK122205 mRNA. Translation: BAC65487.1. Different initiation. AK052145 mRNA. Translation: BAC34857.1. BC048174 mRNA. Translation: AAH48174.1. BC050747 mRNA. Translation: AAH50747.1. |
| IPI | IPI00330262. IPI00400349. IPI00400350. IPI00400351. |
| RefSeq | NP_001153075.1. NM_001159603.1. NP_001153076.1. NM_001159604.1. NP_001153077.1. NM_001159605.1. NP_001153078.1. NM_001159606.1. NP_109647.2. NM_030722.2. |
| UniGene | Mm.440206. |
3D structure databases | |
| ProteinModelPortal | Q80U78. |
| SMR | Q80U78. Positions 793-1171. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q80U78. 1 interaction. |
| MINT | MINT-4109198. |
PTM databases | |
| PhosphoSite | Q80U78. |
Proteomic databases | |
| PaxDb | Q80U78. |
| PRIDE | Q80U78. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000030315; ENSMUSP00000030315; ENSMUSG00000028580. ENSMUST00000097862; ENSMUSP00000095474; ENSMUSG00000028580. ENSMUST00000097864; ENSMUSP00000095476; ENSMUSG00000028580. |
| GeneID | 80912. |
| KEGG | mmu:80912. |
| UCSC | uc008uzl.2. mouse. uc008uzm.3. mouse. |
Organism-specific databases | |
| CTD | 9698. |
| MGI | MGI:1931749. Pum1. |
| Rouge | Search... |
Phylogenomic databases | |
| eggNOG | COG5099. |
| GeneTree | ENSGT00390000017241. |
| HOGENOM | HOG000238461. |
| HOVERGEN | HBG049462. |
| InParanoid | Q80U78. |
| OMA | RHVVGVK. |
| OrthoDB | EOG4P8FHP. |
Gene expression databases | |
| ArrayExpress | Q80U78. |
| Bgee | Q80U78. |
| CleanEx | MM_PUM1. |
| Genevestigator | Q80U78. |
Family and domain databases | |
| Gene3D | 1.25.10.10. 1 hit. |
| InterPro | IPR011989. ARM-like. IPR016024. ARM-type_fold. IPR001313. Pumilio_RNA-bd_rpt. [Graphical view] |
| Pfam | PF00806. PUF. 8 hits. [Graphical view] |
| SMART | SM00025. Pumilio. 8 hits. [Graphical view] |
| SUPFAM | SSF48371. ARM-type_fold. 1 hit. |
| PROSITE | PS50302. PUM. 8 hits. PS50303. PUM_HD. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | PUM1. mouse. |
| NextBio | 350286. |
| SOURCE | Search... |
Entry information
| Entry name | PUM1_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q80U78 Secondary accession number(s): Q80X96 Q9EPU6 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
