Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q80T29 (Q80T29_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length800 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 PAC (PAS-associated C-terminal) domain.

Contains 1 basic helix-loop-helix (bHLH) domain. RuleBase RU000367

Contains bHLH (basic helix-loop-helix) domain. SAAS SAAS000014

Sequences

Sequence LengthMass (Da)Tools
Q80T29 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 6D70BA982C21E985

FASTA80088,250
        10         20         30         40         50         60 
MAATTANPEM TSDVPSLGPT IASGNPGPGI QGGGAVVQRA IKRRSGLDFD DEGEVNSKFL 

        70         80         90        100        110        120 
RCDDEQMCND KERFARSDDE QSSADKERLA RENHSEIERR RRNKMTAYIT ELSDMVPTCS 

       130        140        150        160        170        180 
ALARKPDKLT ILRMAVSHMK SLRGTGNTST DGSYKPSFLT DQELKHLILE AADGFLFIVS 

       190        200        210        220        230        240 
CETGRVVYVS DSVTPVLNQP QSEWFGSTLY DQVHPDDVDK LREQLSTSEN ALTGRILDLK 

       250        260        270        280        290        300 
TGTVKKEGQQ SSMRMCMGSR RSFICRMRCG TSSVDPVSMN RLSFLRNRCR NGLGSVKEGE 

       310        320        330        340        350        360 
PHFVVVHCTG YIKAWPPAGV SLPDDDPEAG QGSKFCLVAI GRLQVTSSPN CTDMSNICQP 

       370        380        390        400        410        420 
TEFISRHNIE GIFTFVDHRC VATVGYQPQE LLGKNIVEFC HPEDQQLLRD SFQQVVKLKG 

       430        440        450        460        470        480 
QVLSVMFRFR AKNREWLWMR TSSFTFQNPY SDEMSIFICT NTNVKNSSQE PRPTLSNTIQ 

       490        500        510        520        530        540 
RSQLGPTTNL SLEMGTGQLA SRQQQQQQQQ QQQQQQQQTE LDMVPGRDGL ASYSHSQVSV 

       550        560        570        580        590        600 
QPVATAGSEH SKPLEKSEGL FVQDRDPRFS EIYPNISADQ SKGLSSSTVP ATQQLFSQGS 

       610        620        630        640        650        660 
SFPPNPRPAE NFRNSGLTPP VTIVQPSSSA GQILAQISRH SNLTQGSAPT WTSSTRPGFS 

       670        680        690        700        710        720 
AQLPTQATAK TRSSQFGVNN FQTSSSFSAM SLPGAPTASP STAAYPTLPN RGSNFPPETG 

       730        740        750        760        770        780 
QTTGQFQTRT AEGVGVWPQW QGQQPHHRSS SNEQHVQPTS AQPSSQPEVF QEMLSMLGDQ 

       790        800 
SNTYNNEEFP DLTMFPPFSE 

« Hide

References

[1]"Identification of novel splice variants of ARNT and ARNT2 in the rat."
Korkalainen M., Tuomisto J., Pohjanvirta R.
Biochem. Biophys. Res. Commun. 303:1095-1100(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: LE EMBL AAO89090.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY264361 mRNA. Translation: AAO89090.1.
UniGeneRn.10520.

3D structure databases

ProteinModelPortalQ80T29.
SMRQ80T29. Positions 354-470.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000060764.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

RGD2153. Arnt.

Phylogenomic databases

HOVERGENHBG000164.
InParanoidQ80T29.

Gene expression databases

GenevestigatorQ80T29.

Family and domain databases

Gene3D4.10.280.10. 1 hit.
InterProIPR011598. bHLH_dom.
IPR001067. Nuc_translocat.
IPR001610. PAC.
IPR000014. PAS.
IPR013767. PAS_fold.
[Graphical view]
PfamPF00010. HLH. 1 hit.
PF00989. PAS. 1 hit.
[Graphical view]
PRINTSPR00785. NCTRNSLOCATR.
SMARTSM00353. HLH. 1 hit.
SM00086. PAC. 1 hit.
SM00091. PAS. 2 hits.
[Graphical view]
SUPFAMSSF47459. SSF47459. 1 hit.
SSF55785. SSF55785. 4 hits.
TIGRFAMsTIGR00229. sensory_box. 1 hit.
PROSITEPS50888. BHLH. 1 hit.
PS50112. PAS. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ80T29_RAT
AccessionPrimary (citable) accession number: Q80T29
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: February 19, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)