Q803F0 (Q803F0_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
TGFB-induced factor EMBL AAQ91279.1

Submitted name:
TGFB-induced factor homeobox 1 EMBL AAH44510.1 Ensembl ENSDARP00000076869

Gene names

Name:	tgif1 ZFIN ZDB-GENE-030131-475 Ensembl ENSDARP00000076869
Synonyms:	TGIF EMBL AAQ91279.1
ORF Names:	zgc:55852 ZFIN ZDB-GENE-030131-475

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAH44510.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	273 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus By similarity RuleBase RU000682.

Ontologies

Keywords
Cellular component	Nucleus SAAS SAAS008422 RuleBase RU000682
Domain	Homeobox SAAS SAAS008422 RuleBase RU000682 EMBL AAH44510.1
Ligand	DNA-binding SAAS SAAS008422 RuleBase RU000682
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	brain morphogenesis Inferred from mutant phenotype. Source: ZFIN regulation of retinoic acid receptor signaling pathway Inferred from mutant phenotype. Source: ZFIN
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q803F0 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: AFF2FFC727FCBD63	FASTA	273	29,687
	10 20 30 40 50 60 MKTKKGVLAM SGSETEDEDS LDVPLDLSSN GGVSGKRKRR GNLPKESVQI LRDWLYQHRY 70 80 90 100 110 120 NAYPSEQEKA LLSKQTHLST LQVCNWFINA RRRLLPEMLR KDGKDPNQFT ISRRGSKGGE 130 140 150 160 170 180 MLSDNSQSPK HGLLANGEDR NSYEPGSPHP TSNTPTSNGY PKKALSPKTP PSPGPVLPRP 190 200 210 220 230 240 SVICHTTITT ATQGINTTTR LGVEGATELP LTDAASLFGC RGEGNVSPQS GLFNTPPPTP 250 260 270 PDLTQDFSGF QLLVDVALKR AAEMELQAKK LLA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Hematopoietic gene expression profile in zebrafish kidney marrow." Song H.-D., Sun X.-J., Deng M., Zhang G.-W., Zhou Y., Wu X.-Y., Sheng Y., Chen Y., Ruan Z., Jiang C.-L., Fan H.-Y., Zon L.I., Kanki J.P., Liu T.X., Look A.T., Chen Z. Proc. Natl. Acad. Sci. U.S.A. 101:16240-16245(2004) [PubMed: 15520368] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: AB EMBL AAH44510.1. Tissue: Whole body EMBL AAH44510.1.
[3]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000076869.
[4]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000076869.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU459174 Genomic DNA. No translation available. BC044510 mRNA. Translation: AAH44510.1. AY391467 mRNA. Translation: AAQ91279.1.
IPI	IPI00496339.
RefSeq	NP_955861.1. NM_199567.1.
UniGene	Dr.139.
3D structure databases
HSSP	HSSP built from PDB template 1LFU based on UniProtKB P41778.
ProteinModelPortal	Q803F0.
SMR	Q803F0. Positions 30-107.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000082434; ENSDARP00000076869; ENSDARG00000059337.
GeneID	321756.
KEGG	dre:321756.
Organism-specific databases
CTD	7050.
ZFIN	ZDB-GENE-030131-475. tgif1.
Phylogenomic databases
eggNOG	fiNOG15175.
GeneTree	ENSGT00550000074260.
HOGENOM	HBG506016.
HOVERGEN	HBG001143.
InParanoid	Q803F0.
OMA	LLSRQTH.
OrthoDB	EOG4JQ3ZS.
Gene expression databases
ArrayExpress	Q803F0.
Bgee	Q803F0.
Family and domain databases
InterPro	IPR001356. Homeobox. IPR008422. Homeobox_KN_domain. IPR009057. Homeodomain-like. IPR012287. Homeodomain-rel. [Graphical view]
Gene3D	G3DSA:1.10.10.60. Homeodomain-rel. 1 hit.
Pfam	PF05920. Homeobox_KN. 1 hit. [Graphical view]
SMART	SM00389. HOX. 1 hit. [Graphical view]
SUPFAM	SSF46689. Homeodomain_like. 1 hit.
PROSITE	PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q803F0_DANRE

Accession

Primary (citable) accession number: Q803F0

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	January 25, 2012
This is version 85 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)