Q802C7 (Q802C7_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
TAR DNA binding protein EMBL AAH49348.1 Ensembl ENSDARP00000058554

Gene names

Name:

tardbp EMBL AAH49348.1 Ensembl ENSDARP00000058554

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAH49348.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	412 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	axon extension Inferred from mutant phenotype. Source: ZFIN locomotory behavior Inferred from mutant phenotype. Source: ZFIN
Molecular function	nucleic acid binding Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q802C7 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 5355FF5F82C00A12	FASTA	412	44,428
	10 20 30 40 50 60 MAEMYIRVAE EENEEPMEIP SEDDGTVLLS TVSAQFPGAC GLRFRSPVSQ CMRGVRLVDG 70 80 90 100 110 120 ILHAPENGWG NLVYVVNYPK ETVLPDNKRK MDEIDASSAT KIKRGDQKTS DLIVLGLPWK 130 140 150 160 170 180 TSEQDLKDYF GTFGEVIMVQ VKRDVKTGNS KGFGFVRFGD WETQSKVMTQ RHMIDGRWCD 190 200 210 220 230 240 CKLPNSKQGI DEPMRSRKVF VGRCTEDMTA DELRQFFMQY GEVTDVFIPK PFRAFAFVTF 250 260 270 280 290 300 ADDQVAAALC GEDLIIKGVS VHISNAEPKH NNTRQMMERA GRFGNGFGGQ GFAGSRSNMG 310 320 330 340 350 360 GGGGGSSSSL GNFGNFNLNP AMMAAAQAAL QSSWGMMGML AQQNQSGTSG TSTSGTSSSR 370 380 390 400 410 DQAQTYSSAN SNYGSSSAAL GWGTGSNSGA ASAGFNSSFG SSMESKSSGW GM

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: AB EMBL AAH49348.1. Tissue: Whole body EMBL AAH49348.1.
[2]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000058554.
[3]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000058554.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BX663614 Genomic DNA. No translation available. BC049348 mRNA. Translation: AAH49348.1.
IPI	IPI00495103.
RefSeq	NP_958884.1. NM_201476.1.
UniGene	Dr.2409.
3D structure databases
HSSP	HSSP built from PDB template 1HD1 based on UniProtKB Q14103.
ProteinModelPortal	Q802C7.
SMR	Q802C7. Positions 96-191, 196-272.
ModBase	Search...
Protein-protein interaction databases
STRING	Q802C7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000058555; ENSDARP00000058554; ENSDARG00000040031.
GeneID	325052.
KEGG	dre:325052.
Organism-specific databases
CTD	23435.
ZFIN	ZDB-GENE-030131-3777. tardbp.
Phylogenomic databases
eggNOG	fiNOG05493.
GeneTree	ENSGT00570000079202.
HOGENOM	HBG379398.
HOVERGEN	HBG058671.
InParanoid	Q802C7.
OrthoDB	EOG447FTT.
Gene expression databases
ArrayExpress	Q802C7.
Bgee	Q802C7.
Family and domain databases
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 2 hits.
Pfam	PF00076. RRM_1. 2 hits. [Graphical view]
SMART	SM00360. RRM. 2 hits. [Graphical view]
PROSITE	PS50102. RRM. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q802C7_DANRE

Accession

Primary (citable) accession number: Q802C7

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	January 25, 2012
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)