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Q7ZVY0

- Q7ZVY0_DANRE

UniProt

Q7ZVY0 - Q7ZVY0_DANRE

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Protein
Submitted name: Cytotoxic granule-associated RNA binding protein 1
Gene
tia1
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. nucleotide binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Cytotoxic granule-associated RNA binding protein 1Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:tia1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 5

Organism-specific databases

ZFINiZDB-GENE-030131-1506. tia1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0724.
GeneTreeiENSGT00750000117551.
HOGENOMiHOG000206748.
HOVERGENiHBG105006.
InParanoidiQ7ZVY0.
KOiK13201.
OMAiEVRIFKM.
OrthoDBiEOG7XH6QJ.
TreeFamiTF312915.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7ZVY0-1 [UniParc]FASTAAdd to Basket

« Hide

MMDDEQPKTL YVGNLSRDVT EALIMQLFGQ IGPCKSCKMI VDTAGNDPYC    50
FVEFFEHRHA AASLAAMNGR KIMGKEVKVN WATSPSSQKK DTSNHFHVFV 100
GDLSPEITTD DIRAAFAPFG RISDARVVKD MATGKSKGYG FVSFFNKWDA 150
ENAIQQMGGQ WLGGRQIRTN WATRKPPAPK ATYETNTKHL SFDEVVNQSS 200
PSNCTVYCGG VTTGLTEQLM RQTFSPFGQI MEVRVFPDKG YSFVRFNSHE 250
SAAHAIVSVN GTSLEGHIVK CYWGKETTDM VSPMQQVQVP QQSKVGFAAQ 300
PYGQWGQWYG NAQQISQYVP NGWQVPTYGV YGQAWNQQGF NHLQAGAGWA 350
GVGAVSNGGV VEPAQGVNGT VLANQSTMGT AGYHTH 386
Length:386
Mass (Da):42,296
Last modified:June 1, 2003 - v1
Checksum:iFE17FF3F9936DB4B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL928954 Genomic DNA. No translation available.
CT027545 Genomic DNA. No translation available.
BC045368 mRNA. Translation: AAH45368.1.
RefSeqiNP_997793.1. NM_212628.1.
UniGeneiDr.159520.

Genome annotation databases

EnsembliENSDART00000074400; ENSDARP00000068889; ENSDARG00000052536.
GeneIDi793165.
KEGGidre:793165.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL928954 Genomic DNA. No translation available.
CT027545 Genomic DNA. No translation available.
BC045368 mRNA. Translation: AAH45368.1 .
RefSeqi NP_997793.1. NM_212628.1.
UniGenei Dr.159520.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSDART00000074400 ; ENSDARP00000068889 ; ENSDARG00000052536 .
GeneIDi 793165.
KEGGi dre:793165.

Organism-specific databases

CTDi 7072.
ZFINi ZDB-GENE-030131-1506. tia1.

Phylogenomic databases

eggNOGi COG0724.
GeneTreei ENSGT00750000117551.
HOGENOMi HOG000206748.
HOVERGENi HBG105006.
InParanoidi Q7ZVY0.
KOi K13201.
OMAi EVRIFKM.
OrthoDBi EOG7XH6QJ.
TreeFami TF312915.

Miscellaneous databases

NextBioi 20931339.

Family and domain databases

Gene3Di 3.30.70.330. 3 hits.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view ]
Pfami PF00076. RRM_1. 3 hits.
[Graphical view ]
SMARTi SM00360. RRM. 3 hits.
[Graphical view ]
PROSITEi PS50102. RRM. 3 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: ABImported.
    Tissue: Whole bodyImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  3. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ7ZVY0_DANRE
AccessioniPrimary (citable) accession number: Q7ZVY0
Secondary accession number(s): A2ATY3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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