Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Cytotoxic granule-associated RNA binding protein 1

Gene

tia1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Cytotoxic granule-associated RNA binding protein 1Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:tia1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437 Componenti: Chromosome 5

Organism-specific databases

ZFINiZDB-GENE-030131-1506. tia1.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000068889.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0724.
GeneTreeiENSGT00790000123014.
HOGENOMiHOG000206748.
HOVERGENiHBG105006.
OMAiGVMEPTQ.
OrthoDBiEOG7XH6QJ.
TreeFamiTF312915.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7ZVY0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMDDEQPKTL YVGNLSRDVT EALIMQLFGQ IGPCKSCKMI VDTAGNDPYC
60 70 80 90 100
FVEFFEHRHA AASLAAMNGR KIMGKEVKVN WATSPSSQKK DTSNHFHVFV
110 120 130 140 150
GDLSPEITTD DIRAAFAPFG RISDARVVKD MATGKSKGYG FVSFFNKWDA
160 170 180 190 200
ENAIQQMGGQ WLGGRQIRTN WATRKPPAPK ATYETNTKHL SFDEVVNQSS
210 220 230 240 250
PSNCTVYCGG VTTGLTEQLM RQTFSPFGQI MEVRVFPDKG YSFVRFNSHE
260 270 280 290 300
SAAHAIVSVN GTSLEGHIVK CYWGKETTDM VSPMQQVQVP QQSKVGFAAQ
310 320 330 340 350
PYGQWGQWYG NAQQISQYVP NGWQVPTYGV YGQAWNQQGF NHLQAGAGWA
360 370 380
GVGAVSNGGV VEPAQGVNGT VLANQSTMGT AGYHTH
Length:386
Mass (Da):42,296
Last modified:June 1, 2003 - v1
Checksum:iFE17FF3F9936DB4B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL928954 Genomic DNA. No translation available.
CT027545 Genomic DNA. No translation available.
BC045368 mRNA. Translation: AAH45368.1.
RefSeqiNP_997793.1. NM_212628.1.
UniGeneiDr.159520.

Genome annotation databases

EnsembliENSDART00000074400; ENSDARP00000068889; ENSDARG00000052536.
GeneIDi793165.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL928954 Genomic DNA. No translation available.
CT027545 Genomic DNA. No translation available.
BC045368 mRNA. Translation: AAH45368.1.
RefSeqiNP_997793.1. NM_212628.1.
UniGeneiDr.159520.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000068889.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000074400; ENSDARP00000068889; ENSDARG00000052536.
GeneIDi793165.

Organism-specific databases

CTDi7072.
ZFINiZDB-GENE-030131-1506. tia1.

Phylogenomic databases

eggNOGiCOG0724.
GeneTreeiENSGT00790000123014.
HOGENOMiHOG000206748.
HOVERGENiHBG105006.
OMAiGVMEPTQ.
OrthoDBiEOG7XH6QJ.
TreeFamiTF312915.

Miscellaneous databases

NextBioi20931339.
PROiQ7ZVY0.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: ABImported.
    Tissue: Whole bodyImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  3. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ7ZVY0_DANRE
AccessioniPrimary (citable) accession number: Q7ZVY0
Secondary accession number(s): A2ATY3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 24, 2015
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.