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Q7ZVY0

- Q7ZVY0_DANRE

UniProt

Q7ZVY0 - Q7ZVY0_DANRE

Protein
Submitted name:

Cytotoxic granule-associated RNA binding protein 1

Gene

tia1

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 93 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Cytotoxic granule-associated RNA binding protein 1Imported
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:tia1Imported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 5

    Organism-specific databases

    ZFINiZDB-GENE-030131-1506. tia1.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0724.
    GeneTreeiENSGT00750000117551.
    HOGENOMiHOG000206748.
    HOVERGENiHBG105006.
    InParanoidiQ7ZVY0.
    KOiK13201.
    OMAiEVRIFKM.
    OrthoDBiEOG7XH6QJ.
    TreeFamiTF312915.

    Family and domain databases

    Gene3Di3.30.70.330. 3 hits.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    PfamiPF00076. RRM_1. 3 hits.
    [Graphical view]
    SMARTiSM00360. RRM. 3 hits.
    [Graphical view]
    PROSITEiPS50102. RRM. 3 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q7ZVY0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MMDDEQPKTL YVGNLSRDVT EALIMQLFGQ IGPCKSCKMI VDTAGNDPYC    50
    FVEFFEHRHA AASLAAMNGR KIMGKEVKVN WATSPSSQKK DTSNHFHVFV 100
    GDLSPEITTD DIRAAFAPFG RISDARVVKD MATGKSKGYG FVSFFNKWDA 150
    ENAIQQMGGQ WLGGRQIRTN WATRKPPAPK ATYETNTKHL SFDEVVNQSS 200
    PSNCTVYCGG VTTGLTEQLM RQTFSPFGQI MEVRVFPDKG YSFVRFNSHE 250
    SAAHAIVSVN GTSLEGHIVK CYWGKETTDM VSPMQQVQVP QQSKVGFAAQ 300
    PYGQWGQWYG NAQQISQYVP NGWQVPTYGV YGQAWNQQGF NHLQAGAGWA 350
    GVGAVSNGGV VEPAQGVNGT VLANQSTMGT AGYHTH 386
    Length:386
    Mass (Da):42,296
    Last modified:June 1, 2003 - v1
    Checksum:iFE17FF3F9936DB4B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL928954 Genomic DNA. No translation available.
    CT027545 Genomic DNA. No translation available.
    BC045368 mRNA. Translation: AAH45368.1.
    RefSeqiNP_997793.1. NM_212628.1.
    UniGeneiDr.159520.

    Genome annotation databases

    EnsembliENSDART00000074400; ENSDARP00000068889; ENSDARG00000052536.
    GeneIDi793165.
    KEGGidre:793165.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL928954 Genomic DNA. No translation available.
    CT027545 Genomic DNA. No translation available.
    BC045368 mRNA. Translation: AAH45368.1 .
    RefSeqi NP_997793.1. NM_212628.1.
    UniGenei Dr.159520.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000074400 ; ENSDARP00000068889 ; ENSDARG00000052536 .
    GeneIDi 793165.
    KEGGi dre:793165.

    Organism-specific databases

    CTDi 7072.
    ZFINi ZDB-GENE-030131-1506. tia1.

    Phylogenomic databases

    eggNOGi COG0724.
    GeneTreei ENSGT00750000117551.
    HOGENOMi HOG000206748.
    HOVERGENi HBG105006.
    InParanoidi Q7ZVY0.
    KOi K13201.
    OMAi EVRIFKM.
    OrthoDBi EOG7XH6QJ.
    TreeFami TF312915.

    Miscellaneous databases

    NextBioi 20931339.

    Family and domain databases

    Gene3Di 3.30.70.330. 3 hits.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    Pfami PF00076. RRM_1. 3 hits.
    [Graphical view ]
    SMARTi SM00360. RRM. 3 hits.
    [Graphical view ]
    PROSITEi PS50102. RRM. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: ABImported.
      Tissue: Whole bodyImported.
    2. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: TuebingenImported.
    3. "The zebrafish reference genome sequence and its relationship to the human genome."
      Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
      , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
      Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TuebingenImported.

    Entry informationi

    Entry nameiQ7ZVY0_DANRE
    AccessioniPrimary (citable) accession number: Q7ZVY0
    Secondary accession number(s): A2ATY3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 93 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3