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Protein
Submitted name:

NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)

Gene

snu13b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • maturation of LSU-rRNA Source: GO_Central
  • maturation of SSU-rRNA Source: GO_Central
  • mRNA splicing, via spliceosome Source: GO_Central
  • somite development Source: ZFIN
Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-DRE-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-DRE-72163. mRNA Splicing - Major Pathway.
R-DRE-72165. mRNA Splicing - Minor Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:snu13bImported
Synonyms:nhp2l1Imported, nhp2l1bImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 12

Organism-specific databases

ZFINiZDB-GENE-030131-9670. snu13b.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Expressioni

Gene expression databases

BgeeiENSDARG00000023299.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000038446.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini22 – 111Ribosomal_L7AeInterPro annotationAdd BLAST90

Phylogenomic databases

eggNOGiKOG3387. Eukaryota.
COG1358. LUCA.
GeneTreeiENSGT00550000074840.
HOGENOMiHOG000055226.
HOVERGENiHBG000328.
KOiK12845.
OMAiPQVNPKA.
OrthoDBiEOG091G0YVI.
TreeFamiTF300184.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR002415. H/ACA_rnp_Nhp2_euk.
IPR029064. L30e-like.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
IPR018492. Ribosomal_L7Ae/L8/Nhp2.
IPR004037. Ribosomal_L7Ae_CS.
[Graphical view]
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
PRINTSiPR00881. L7ARS6FAMILY.
PR00883. NUCLEARHMG.
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS01082. RIBOSOMAL_L7AE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7ZV23-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEAEVNPKA YPLADATLSK TILDLVQQAS NYKQLRKGAN EATKTLNRGI
60 70 80 90 100
SEFIVMAADA EPLEIILHLP LLCEDKNVPY VFVRSKQALG RACGVSRPVI
110 120
ATSVTIKEGS QLKPQIQSVQ MAIERLLV
Length:128
Mass (Da):14,018
Last modified:June 1, 2003 - v1
Checksum:i308D3EA45B64408C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU104767 Genomic DNA. No translation available.
BC046034 mRNA. Translation: AAH46034.1.
RefSeqiNP_955829.1. NM_199535.2.
UniGeneiDr.106039.

Genome annotation databases

EnsembliENSDART00000029133; ENSDARP00000038446; ENSDARG00000023299.
GeneIDi321114.
KEGGidre:321114.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU104767 Genomic DNA. No translation available.
BC046034 mRNA. Translation: AAH46034.1.
RefSeqiNP_955829.1. NM_199535.2.
UniGeneiDr.106039.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000038446.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000029133; ENSDARP00000038446; ENSDARG00000023299.
GeneIDi321114.
KEGGidre:321114.

Organism-specific databases

CTDi321114.
ZFINiZDB-GENE-030131-9670. snu13b.

Phylogenomic databases

eggNOGiKOG3387. Eukaryota.
COG1358. LUCA.
GeneTreeiENSGT00550000074840.
HOGENOMiHOG000055226.
HOVERGENiHBG000328.
KOiK12845.
OMAiPQVNPKA.
OrthoDBiEOG091G0YVI.
TreeFamiTF300184.

Enzyme and pathway databases

ReactomeiR-DRE-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-DRE-72163. mRNA Splicing - Major Pathway.
R-DRE-72165. mRNA Splicing - Minor Pathway.

Gene expression databases

BgeeiENSDARG00000023299.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR002415. H/ACA_rnp_Nhp2_euk.
IPR029064. L30e-like.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
IPR018492. Ribosomal_L7Ae/L8/Nhp2.
IPR004037. Ribosomal_L7Ae_CS.
[Graphical view]
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
PRINTSiPR00881. L7ARS6FAMILY.
PR00883. NUCLEARHMG.
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS01082. RIBOSOMAL_L7AE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ7ZV23_DANRE
AccessioniPrimary (citable) accession number: Q7ZV23
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: October 5, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.