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Protein
Submitted name:

RAD54-like (S. cerevisiae)

Gene

rad54l

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi670 – 6701Zinc; via tele nitrogenCombined sources
Metal bindingi675 – 6751ZincCombined sources
Metal bindingi678 – 6781ZincCombined sources
Metal bindingi702 – 7021Zinc; via pros nitrogenCombined sources

GO - Molecular functioni

  • ATP binding Source: InterPro
  • DNA binding Source: ZFIN
  • DNA-dependent ATPase activity Source: ZFIN
  • metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
RAD54-like (S. cerevisiae)Imported
Gene namesi
Name:rad54lImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-040426-968. rad54l.

PTM / Processingi

Proteomic databases

PaxDbiQ7ZV09.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000007237.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Z3IX-ray3.00X92-735[»]
ProteinModelPortaliQ7ZV09.
SMRiQ7ZV09. Positions 92-735.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ7ZV09.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini164 – 339176Helicase ATP-bindingInterPro annotationAdd
BLAST
Domaini493 – 647155Helicase C-terminalInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0390. Eukaryota.
COG0553. LUCA.
HOGENOMiHOG000204521.
HOVERGENiHBG058654.
KOiK10875.
PhylomeDBiQ7ZV09.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PfamiPF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q7ZV09-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRSLAPSQV AKRKQGPDSD DEEDWEPDME PQSKRDCREK YISPYRKPLT
60 70 80 90 100
PLTNRPVCAD GNEHEAFIRK ILSKPFKIPI PNYTGVLGLR ALGLRRAGVR
110 120 130 140 150
KALHDPFEDG ALVLYEPPAI SAHDLIKADK EKLPVHVVVD PVLSKVLRPH
160 170 180 190 200
QREGVKFLWD CVTGRRIENS YGCIMADEMG LGKTLQCITL IWTLLKQSPD
210 220 230 240 250
CKPEIDKVIV VSPSSLVRNW YNEVGKWLGG RVQPVAIDGG SKDEIDSKLV
260 270 280 290 300
NFISQQGMRI PTPILIISYE TFRLHAEVLH KGKVGLVICD EGHRLKNSDN
310 320 330 340 350
QTYLALNSMN AQRRVLISGT PIQNDLLEYF SLVHFVNSGI LGTAQEFKKR
360 370 380 390 400
FEIPILKGRD ADASDKDRAA GEQKLQELIS IVNRCLIRRT SDILSKYLPV
410 420 430 440 450
KIEQVVCCNL TPLQKELYKL FLKQAKPVES LQTGKISVSS LSSITSLKKL
460 470 480 490 500
CNHPALIYEK CLTGEEGFDG ALDLFPQNYS TKAVEPQLSG KMLVLDYILA
510 520 530 540 550
MTRTTTSDKV VLVSNYTQTL DLFEKLCRNR RYLYVRLDGT MSIKKRAKIV
560 570 580 590 600
ERFNNPSSPE FIFMLSSKAG GCGLNLIGAN RLVMFDPDWN PANDEQAMAR
610 620 630 640 650
VWRDGQKKTC YIYRLLSTGT IEEKILQRQA HKKALSSCVV DEEQDVERHF
660 670 680 690 700
SLGELRELFS LNEKTLSDTH DRFRCRRCVN GRQVRPPPDD SDCTCDLSNW
710 720 730
HHCADKRGLR DPVLQASWDA AVSFVFHQRS HEDQRGVV
Length:738
Mass (Da):83,645
Last modified:June 1, 2003 - v1
Checksum:i73A44EEDA070301E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC046050 mRNA. Translation: AAH46050.1.
RefSeqiNP_957438.1. NM_201144.1.
UniGeneiDr.78565.

Genome annotation databases

GeneIDi394119.
KEGGidre:394119.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC046050 mRNA. Translation: AAH46050.1.
RefSeqiNP_957438.1. NM_201144.1.
UniGeneiDr.78565.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Z3IX-ray3.00X92-735[»]
ProteinModelPortaliQ7ZV09.
SMRiQ7ZV09. Positions 92-735.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000007237.

Proteomic databases

PaxDbiQ7ZV09.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi394119.
KEGGidre:394119.

Organism-specific databases

CTDi8438.
ZFINiZDB-GENE-040426-968. rad54l.

Phylogenomic databases

eggNOGiKOG0390. Eukaryota.
COG0553. LUCA.
HOGENOMiHOG000204521.
HOVERGENiHBG058654.
KOiK10875.
PhylomeDBiQ7ZV09.

Miscellaneous databases

EvolutionaryTraceiQ7ZV09.
NextBioi20815072.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PfamiPF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Yang G., Zhao X., Li B., Liu J., Zheng Q., Tong Y., Li Z.
    Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Whole bodyImported.
  2. "Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54."
    Thoma N.H., Czyzewski B.K., Alexeev A.A., Mazin A.V., Kowalczykowski S.C., Pavletich N.P.
    Nat. Struct. Mol. Biol. 12:350-356(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.00 ANGSTROMS) OF 92-735 IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ7ZV09_DANRE
AccessioniPrimary (citable) accession number: Q7ZV09
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 16, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.