RAD54-like (S. cerevisiae) - Danio rerio (Zebrafish)

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Q7ZV09 (Q7ZV09_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified November 16, 2011. Version 62. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
RAD54-like (S. cerevisiae) EMBL AAH46050.1

Gene names

Name:

rad54l EMBL AAH46050.1

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAH46050.1

Taxonomic identifier

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	738 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Metal-binding PDB 1Z3I Zinc PDB 1Z3I
Technical term	3D-structure PDB 1Z3I
Gene Ontology (GO)
Molecular function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA-dependent ATPase activity Inferred from direct assay Ref.2. Source: ZFIN helicase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

1

Zinc; via tele nitrogen PDB 1Z3I

Metal binding

1

Metal binding

1

Metal binding

1

Zinc; via pros nitrogen PDB 1Z3I

Sequences

Sequence

Length

Mass (Da)

Tools

Q7ZV09 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 73A44EEDA070301E
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738

83,645

        10         20         30         40         50         60 
MRRSLAPSQV AKRKQGPDSD DEEDWEPDME PQSKRDCREK YISPYRKPLT PLTNRPVCAD 

        70         80         90        100        110        120 
GNEHEAFIRK ILSKPFKIPI PNYTGVLGLR ALGLRRAGVR KALHDPFEDG ALVLYEPPAI 

       130        140        150        160        170        180 
SAHDLIKADK EKLPVHVVVD PVLSKVLRPH QREGVKFLWD CVTGRRIENS YGCIMADEMG 

       190        200        210        220        230        240 
LGKTLQCITL IWTLLKQSPD CKPEIDKVIV VSPSSLVRNW YNEVGKWLGG RVQPVAIDGG 

       250        260        270        280        290        300 
SKDEIDSKLV NFISQQGMRI PTPILIISYE TFRLHAEVLH KGKVGLVICD EGHRLKNSDN 

       310        320        330        340        350        360 
QTYLALNSMN AQRRVLISGT PIQNDLLEYF SLVHFVNSGI LGTAQEFKKR FEIPILKGRD 

       370        380        390        400        410        420 
ADASDKDRAA GEQKLQELIS IVNRCLIRRT SDILSKYLPV KIEQVVCCNL TPLQKELYKL 

       430        440        450        460        470        480 
FLKQAKPVES LQTGKISVSS LSSITSLKKL CNHPALIYEK CLTGEEGFDG ALDLFPQNYS 

       490        500        510        520        530        540 
TKAVEPQLSG KMLVLDYILA MTRTTTSDKV VLVSNYTQTL DLFEKLCRNR RYLYVRLDGT 

       550        560        570        580        590        600 
MSIKKRAKIV ERFNNPSSPE FIFMLSSKAG GCGLNLIGAN RLVMFDPDWN PANDEQAMAR 

       610        620        630        640        650        660 
VWRDGQKKTC YIYRLLSTGT IEEKILQRQA HKKALSSCVV DEEQDVERHF SLGELRELFS 

       670        680        690        700        710        720 
LNEKTLSDTH DRFRCRRCVN GRQVRPPPDD SDCTCDLSNW HHCADKRGLR DPVLQASWDA 

       730 
AVSFVFHQRS HEDQRGVV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Whole body EMBL AAH46050.1.
[2]	"Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54." Thoma N.H., Czyzewski B.K., Alexeev A.A., Mazin A.V., Kowalczykowski S.C., Pavletich N.P. Nat. Struct. Mol. Biol. 12:350-356(2005) [PubMed: 15806108] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (3.00 ANGSTROMS) OF 92-735 IN COMPLEX WITH ZINC.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BC046050 mRNA. Translation: AAH46050.1.

IPI

RefSeq

NP_957438.1. NM_201144.1.

UniGene

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1Z3I	X-ray	3.00	X	92-735	[»]

ProteinModelPortal

SMR

Q7ZV09. Positions 92-735.

ModBase

Protein-protein interaction databases

STRING

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

GeneID

KEGG

Organism-specific databases

CTD

ZFIN

ZDB-GENE-040426-968. rad54l.

Phylogenomic databases

eggNOG

GeneTree

ENSGT00550000074619.

HOVERGEN

InParanoid

OrthoDB

PhylomeDB

Gene expression databases

ArrayExpress

Bgee

Family and domain databases

InterPro

IPR014001. DEAD-like_helicase.
IPR001650. Helicase_C.
IPR013967. Rad54_N.
IPR000330. SNF2_N.
[Graphical view]

KO

Pfam

PF00271. Helicase_C. 1 hit.
PF08658. Rad54_N. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]

SMART

SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]

PROSITE

PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

Q7ZV09_DANRE

Accession

Primary (citable) accession number: Q7ZV09

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	November 16, 2011
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info